ihmwg / python-ihmLinks
Python package for handling IHM mmCIF and BinaryCIF files
☆18Updated last week
Alternatives and similar repositories for python-ihm
Users that are interested in python-ihm are comparing it to the libraries listed below
Sorting:
- FreeSASA Python Module☆57Updated 2 months ago
 - C-library for calculating Solvent Accessible Surface Areas☆162Updated 3 months ago
 - Protein and nucleic acid validation service☆89Updated last year
 - ☆74Updated 2 weeks ago
 - Modeling with limited data☆59Updated 3 months ago
 - A simple Python library to generate model peptides☆88Updated 4 years ago
 - Python interface for the RCSB PDB search API.☆65Updated 7 months ago
 - A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"☆38Updated 2 years ago
 - PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.☆144Updated 8 months ago
 - Interface to OpenMM for easy setup of molecular dynamic simulations of protein-ligand complexes☆151Updated 2 weeks ago
 - Software for biomolecular electrostatics and solvation calculations☆114Updated last year
 - A simplified implementation of DSSP algorithm for PyTorch and NumPy☆94Updated 4 months ago
 - Calculation of interatomic interactions in molecular structures☆109Updated last year
 - HDXer is a package to compute Hydrogen-Deuterium exchange data from biomolecular simulations, compare to experiment, and perform ensemble…☆19Updated 2 years ago
 - ☆45Updated this week
 - A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dicti…☆69Updated 2 weeks ago
 - Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation☆132Updated 2 years ago
 - The MinHashed Atom Pair fingerprint of radius 2☆117Updated 2 years ago
 - mmCIF Core Access Library☆48Updated last week
 - Reduce - tool for adding and correcting hydrogens in PDB files☆156Updated 5 months ago
 - A python toolkit for analysing membrane protein-lipid interactions.☆68Updated last week
 - qFit: Automated and unbiased multi-conformer models from X-ray and EM maps.☆45Updated 2 weeks ago
 - 📖 mmCIF support for hybrid/integrative models☆23Updated 5 months ago
 - View proteins and trajectories in the terminal☆111Updated 5 years ago
 - Modeling molecular ensembles with scalable data structures and parallel computing☆36Updated this week
 - Source code and examples for AlphaFold Unmasked☆75Updated last month
 - An application for configuring and running simulations with OpenMM☆74Updated this week
 - Code and resources for the EPSRC BioSimSpace project.☆78Updated 2 months ago
 - Source code for HOLE program.☆37Updated last year
 - The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websear…☆84Updated last month