Web application for protein-ligand binding sites analysis and visualization
☆20Dec 27, 2025Updated 7 months ago
Alternatives and similar repositories for prankweb
Users that are interested in prankweb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The central entry point to the P2Rank project with links to the individual projects, including references to documentation, datasets, etc…☆14Feb 11, 2026Updated 5 months ago
- Webserver & command-line tool for search of APO (unbound) protein structures from HOLO (bound) forms and vice versa. http://apoholo.cz☆19Jun 14, 2024Updated 2 years ago
- Scripts for the creation of CryptoBench, a new dataset of cryptic binding sites☆18Jun 24, 2026Updated last month
- MOLeculAR structure annoTator☆33Oct 2, 2024Updated last year
- Web application for protein-ligand binding sites analysis and visualization☆16Jan 9, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Template-based RNA secondary structure visualization☆29Nov 20, 2024Updated last year
- This is a GitHub Repository containing the data and code used for a thorough comparison of 11 ligand binding site prediction tools☆18Nov 19, 2024Updated last year
- Deep Learning Seminar -- ÚFAL course NPFL117☆17Nov 22, 2022Updated 3 years ago
- ☆79Jun 22, 2024Updated 2 years ago
- Biobb_amber is a BioBB category for AMBER MD package.☆15Jul 21, 2026Updated 2 weeks ago
- Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres☆16Oct 2, 2024Updated last year
- Python application for finding apo and holo structures for user-defined protein-ligand interactions☆10Feb 7, 2023Updated 3 years ago
- ☆23Aug 25, 2023Updated 2 years ago
- Fast embedding ot multidimensional datasets, great for cytometry data☆26Mar 8, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DynamicGT: a dynamic-aware geometric transformer model to predict protein binding interfaces in flexible and disordered regions☆16Jun 18, 2026Updated last month
- MM/PBSA binding free energy calculation☆22May 31, 2024Updated 2 years ago
- Mol* as anywidget☆54Oct 13, 2025Updated 9 months ago
- GPU-accelerated protein-ligand docking with automated pocket detection, exploring through multi-pocket conditioning. Official Implementa…☆74Nov 22, 2025Updated 8 months ago
- DockCADD An automated computational framework for molecular docking☆15Mar 31, 2026Updated 4 months ago
- parKVFinder-win: thread-level parallel KVFinder for Windows☆10Sep 12, 2024Updated last year
- Going through a setting up a basic cheminformatics pipeline for the target EGFR☆19Apr 1, 2025Updated last year
- Sort & Slice: A Simple and Superior Alternative to Hash-Based Folding for Extended-Connectivity Fingerprints (ECFPs)☆10Feb 13, 2025Updated last year
- A deep learning system that predicts Absorption, Distribution, Metabolism, Excretion, and Toxicity (ADMET) properties from molecular stru…☆17Dec 8, 2025Updated 8 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A protein active site alignment tool☆10Nov 24, 2022Updated 3 years ago
- A generic mechanism for describing views used in molecular visualizations☆66Aug 3, 2026Updated last week
- This repo is deprecated. I move the work to support molstar in nglview: https://github.com/nglviewer/nglview☆12Dec 3, 2024Updated last year
- A model-context-protocol server for molecules.☆96Apr 20, 2025Updated last year
- A Python tool for automated identification and topological analysis (QTAIM) of Critical Points at the interface between molecular fragmen…☆23Mar 25, 2026Updated 4 months ago
- SubPEx (Sub-Pocket Explorer) is a tool to enhance ensemble (multiple-receptor/relaxed-complex) virtual screening. It uses weighted ensemb…☆18Jun 30, 2025Updated last year
- Interactive dimensionality reduction for large datasets☆20Jul 11, 2023Updated 3 years ago
- De novo design of small molecule binding sites into proteins☆11Apr 14, 2021Updated 5 years ago
- Predict binding affinity of ligand-protein complexes using Graph Neural Networks. The model is implemented using PyTorch Geometric and ba…☆11Nov 26, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆86May 18, 2026Updated 2 months ago
- FeNNol Pretrained Models Collection☆21Dec 17, 2025Updated 7 months ago
- Code for the combinatorial synthesis library variational auto-encoder (CSLVAE) as described in the paper, "An efficient graph generative …☆14Nov 17, 2023Updated 2 years ago
- ☆27Jul 30, 2025Updated last year
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Using a joint AE and property prediction model to estimate OOD molecules and quantify uncertainty☆27Apr 25, 2026Updated 3 months ago
- Slides + Iframe = sliFrame☆54Apr 6, 2025Updated last year