Web application for protein-ligand binding sites analysis and visualization
☆20Dec 27, 2025Updated 2 months ago
Alternatives and similar repositories for prankweb
Users that are interested in prankweb are comparing it to the libraries listed below
Sorting:
- The central entry point to the P2Rank project with links to the individual projects, including references to documentation, datasets, etc…☆13Feb 11, 2026Updated last month
- Webserver & command-line tool for search of APO (unbound) protein structures from HOLO (bound) forms and vice versa. http://apoholo.cz☆17Jun 14, 2024Updated last year
- MOLeculAR structure annoTator☆33Oct 2, 2024Updated last year
- Template-based RNA secondary structure visualization☆28Nov 20, 2024Updated last year
- Web application for protein-ligand binding sites analysis and visualization☆16Jan 9, 2023Updated 3 years ago
- Biobb_amber is a BioBB category for AMBER MD package.☆14Mar 5, 2026Updated 2 weeks ago
- This is a GitHub Repository containing the data and code used for a thorough comparison of 11 ligand binding site prediction tools☆17Nov 19, 2024Updated last year
- ☆78Jun 22, 2024Updated last year
- Deep Learning Seminar -- ÚFAL course NPFL117☆17Nov 22, 2022Updated 3 years ago
- GPU-accelerated protein-ligand docking with automated pocket detection, exploring through multi-pocket conditioning. Official Implementa…☆70Nov 22, 2025Updated 3 months ago
- Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres☆16Oct 2, 2024Updated last year
- Mol* as anywidget☆52Oct 13, 2025Updated 5 months ago
- ☆22Aug 25, 2023Updated 2 years ago
- A generic mechanism for describing views used in molecular visualizations☆63Mar 1, 2026Updated 2 weeks ago
- Fast embedding ot multidimensional datasets, great for cytometry data☆26Mar 8, 2026Updated last week
- MM/PBSA binding free energy calculation☆22May 31, 2024Updated last year
- Javascript based component for highlighting text-mined annotations of different semantic types in a full text article identified by a PMC…☆11Nov 29, 2016Updated 9 years ago
- DockCADD An automated computational framework for molecular docking☆15Mar 9, 2025Updated last year
- Sort & Slice: A Simple and Superior Alternative to Hash-Based Folding for Extended-Connectivity Fingerprints (ECFPs)☆10Feb 13, 2025Updated last year
- parKVFinder-win: thread-level parallel KVFinder for Windows☆10Sep 12, 2024Updated last year
- Going through a setting up a basic cheminformatics pipeline for the target EGFR☆19Apr 1, 2025Updated 11 months ago
- A model-context-protocol server for molecules.☆90Apr 20, 2025Updated 11 months ago
- Chiral Version of the MinHashed Atom-Pair Fingerprint☆24Dec 20, 2024Updated last year
- TrajCast: Force-Free MD Through Autoregressive Equivariant Networks☆60Sep 23, 2025Updated 5 months ago
- A protein active site alignment tool☆10Nov 24, 2022Updated 3 years ago
- This repo is deprecated. I move the work to support molstar in nglview: https://github.com/nglviewer/nglview☆12Dec 3, 2024Updated last year
- ☆45Oct 17, 2025Updated 5 months ago
- SubPEx (Sub-Pocket Explorer) is a tool to enhance ensemble (multiple-receptor/relaxed-complex) virtual screening. It uses weighted ensemb…☆18Jun 30, 2025Updated 8 months ago
- De novo design of small molecule binding sites into proteins☆12Apr 14, 2021Updated 4 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Force-field-enhanced Neural Networks optimized library☆82Feb 9, 2026Updated last month
- Code for running BinderFlow☆64Nov 21, 2025Updated 4 months ago
- This repository contained python code used to do organic free energy calculation. Reference: http://www.bevanlab.biochem.vt.edu/Pages/Per…☆11Aug 2, 2018Updated 7 years ago
- Example of using JupyterHub with JupyterLab RTC☆11Dec 17, 2021Updated 4 years ago
- Contrastive learning and pre-trained encoder (CLAPE) for protein-small molecules binding (SMB) sites prediction☆19Aug 22, 2024Updated last year
- Drug-Likeness☆16Dec 11, 2022Updated 3 years ago
- Slides + Iframe = sliFrame☆55Apr 6, 2025Updated 11 months ago
- BioMetAll is a command line application to allow the identification of metal-binding sites in proteins from backbone preorganization.☆12May 10, 2024Updated last year
- ☆28Mar 16, 2023Updated 3 years ago