Alternatives and similar repositories for PandemicLLM

Users that are interested in PandemicLLM are comparing it to the libraries listed below

• wuaipinglab / sitePath

  View on GitHub
  Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations
  ☆11Sep 18, 2025Updated 5 months ago
• stur86 / compyrtment

  View on GitHub
  A simple Python library for compartment models
  ☆11Aug 23, 2021Updated 4 years ago
• ACCIDDA / influpaint

  View on GitHub
  Influpaint : Inpainting denoising diffusion probabilistic models for infectious disease (such as influenza) forecasting
  ☆16Jan 29, 2026Updated 2 weeks ago
• alvinxhan / Phydelity

  View on GitHub
  Inference of putative transmission phylogenetic clusters
  ☆12Oct 13, 2020Updated 5 years ago
• CDCgov / covid19-forecast-hub

  View on GitHub
  A repository run by the US CDC to collect forecasts of incident COVID-19 hospital admissions and emergency department visits.
  ☆22Updated this week
• behnamnkp / Deep-MTS-LSTM

  View on GitHub
  ☆13Nov 28, 2023Updated 2 years ago
• phylogeography / SpreaD3

  View on GitHub
  Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3
  ☆17Apr 28, 2023Updated 2 years ago
• cbg-ethz / cojac

  View on GitHub
  ☆19Nov 24, 2025Updated 2 months ago
• Emergent-Epidemics / covid19_npi_china

  View on GitHub
  Code for: The effect of human mobility and control measures on the COVID-19 epidemic in China
  ☆22Dec 1, 2022Updated 3 years ago
• ukhsa-collaboration / pygom

  View on GitHub
  ODE modelling in Python
  ☆30Jan 31, 2026Updated 2 weeks ago
• MJomaba / flu-evidence-synthesis

  View on GitHub
  Code for reconstructing influenza dynamics from surveillance data using evidence synthesis techniques
  ☆21Apr 26, 2022Updated 3 years ago
• BioMedBigDataCenter / VENAS

  View on GitHub
  ☆16Aug 17, 2023Updated 2 years ago
• GreyGuoweiChen / VirBot

  View on GitHub
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆34Jul 29, 2024Updated last year
• v1xerunt / STAN

  View on GitHub
  ☆24Dec 13, 2023Updated 2 years ago
• UCL / TLOmodel

  View on GitHub
  Epidemiology modelling framework for the Thanzi la Onse project
  ☆33Updated this week
• reconhub / outbreaker2

  View on GitHub
  Disease outbreak reconstruction from epidemiological and genetic data
  ☆35Dec 16, 2025Updated 2 months ago
• HKUST-KnowComp / Motif-based-PageRank

  View on GitHub
  ☆33Jan 4, 2020Updated 6 years ago
• bear96 / GABM-Epidemic

  View on GitHub
  This repository contains the code for the paper "Epidemic modelling with Generative Agents"
  ☆35Nov 23, 2023Updated 2 years ago
• marseille-proteomique / DIAgui

  View on GitHub
  An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)
  ☆13Feb 4, 2026Updated 2 weeks ago
• SimonYangNWPU / Citation-Style-for-IOPEN

  View on GitHub
  A CSL file for zotero users in IOPEN
  ☆10May 18, 2022Updated 3 years ago
• LogIN- / fluprint

  View on GitHub
  Import script needed to build FluPRINT database from source
  ☆11May 23, 2019Updated 6 years ago
• epistorm / epydemix

  View on GitHub
  epydemix, the ABC of epidemics
  ☆57Updated this week
• flutrack / Flutrack.org_webapp_source_code

  View on GitHub
  Flutrack platform gathers flu related tweets from the entire world, with searching tag, words that are influenza synonyms and flu symptom…
  ☆13Apr 22, 2019Updated 6 years ago
• giswqs / Depression-Analysis-Toolbox

  View on GitHub
  An ArcGIS toolbox for identifying nested depressions in digital elevation models (DEMs)
  ☆15Jul 13, 2019Updated 6 years ago
• nicsteyn2 / NZWastewaterModelling

  View on GitHub
  ☆10Sep 30, 2025Updated 4 months ago
• FluSightNetwork / cdc-flusight-ensemble

  View on GitHub
  Guidelines and forecasts for a collaborative U.S. influenza forecasting project.
  ☆39May 4, 2020Updated 5 years ago
• BorchLab / immApex

  View on GitHub
  Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning
  ☆12Feb 6, 2026Updated last week
• open-sir / open-sir

  View on GitHub
  Python SIR-x model implementation
  ☆10Dec 8, 2022Updated 3 years ago
• sdwfrost / influenza-dynamics-practical-h5n1

  View on GitHub
  Inferring spatiotemporal dynamics of H5N1 influenza from sequence data
  ☆10Sep 6, 2013Updated 12 years ago
• revbayes / RevGadgets

  View on GitHub
  Postprocessing gadgets for output generated by RevBayes
  ☆14Feb 6, 2026Updated last week
• midas-network / flu-scenario-modeling-hub_archive

  View on GitHub
  Flu Scenario Modeling Hub
  ☆12Apr 22, 2025Updated 9 months ago
• whrc / Soil-Carbon-Debt

  View on GitHub
  R code and spatial predictions for WHRC-TNC project modeling spatial extent of soil carbon loss due to agriculture
  ☆17Oct 25, 2017Updated 8 years ago
• ec-jrc / JRC-EUROMOD-software-source-code

  View on GitHub
  ☆18Jan 13, 2026Updated last month
• softmin / ReHLine-r

  View on GitHub
  Regularized Composite ReLU-ReHU Loss Minimization with Linear Computation and Linear Convergence
  ☆11Feb 10, 2024Updated 2 years ago
• angela-li / rladies-spatial-data

  View on GitHub
  Materials for spatial data analysis talk for R-Ladies Chicago, April 2018
  ☆16Apr 30, 2018Updated 7 years ago
• axelbol / football_data

  View on GitHub
  ☆14Nov 24, 2025Updated 2 months ago
• appliedepi / epirhandbook

  View on GitHub
  An R package to accompany the Epidemiology R Handbook, a free open-access R reference manual for applied epidemiologists and public healt…
  ☆50May 16, 2025Updated 9 months ago
• V-Z / course-r-mol-data

  View on GitHub
  R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecula…
  ☆11Jan 29, 2026Updated 2 weeks ago
• pachterlab / LSCHWCP_2023

  View on GitHub
  Identification of viral RdRPs in single-cell RNA sequencing data
  ☆13Jul 23, 2025Updated 6 months ago