micans / bash-utilsLinks
Unix terminal histograms, sequencing depth and bar charts (hissyfit). Small data/file munge, morph, find and count scripts/functions in various languages, mostly bash and perl. For apparix see the apparix repository that is a sibling to this one.
☆21Updated this week
Alternatives and similar repositories for bash-utils
Users that are interested in bash-utils are comparing it to the libraries listed below
Sorting:
- A set of Unix shell command line tools for quick and convenient batch processing of tabular text files (a.k.a., tab-delimited, tsv, csv, …☆35Updated 10 years ago
- mirror of GNU Datamash. Send questions/comments/bugs to bug-datamash@gnu.org☆77Updated 2 months ago
- Automate new Mac setup☆24Updated 3 weeks ago
- Log shell-commands and used files. Snapshot executed scripts. Fully automatic.☆206Updated 9 months ago
- Command line directory bookmarks with jumping to bookmarks, subdirectory tab completion, distant listing etc☆50Updated 4 months ago
- Library of snakemake rules.☆12Updated 7 years ago
- Nextflow pipeline wrapper for executing Cell Ranger☆13Updated 3 years ago
- quickly plot a histogram on the CLI☆47Updated 3 weeks ago
- command-line bootcamp adventure in your browser☆103Updated 3 years ago
- python stuff I use☆19Updated 6 years ago
- A tutorial for using git-annex to shared large datasets and code within the Lab.☆61Updated 3 years ago
- Useful FILe and stream Operations☆45Updated 10 years ago
- A cookiecutter template for Snakemake workflows☆60Updated 4 years ago
- Scripts for miscelleneous bioinformatics tasks☆49Updated 5 years ago
- Mulled - Automatized Containerized Software Repository☆66Updated last year
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 8 years ago
- WDL and CWL compiler for the DNAnexus platform☆35Updated this week
- Dockerfiles to build Biopython instances☆28Updated 9 years ago
- Python for Command Line Oneliners☆19Updated 11 years ago
- convert your 23andme raw file to VCF | DEPRECATED, please see https://github.com/plantimals/2vcf☆100Updated 6 years ago
- ☆11Updated last year
- YAML template engine☆42Updated 2 months ago
- Easy semver tool -- get/set package version from git tags (Github/Bitbucket/Gitlab), composer.json (PHP), package.json (npm)☆26Updated 3 months ago
- rf☆12Updated 7 months ago
- convert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations☆60Updated 6 years ago
- chitin: an awful shell for awful bioinformaticians☆61Updated 5 years ago
- Collection of various scripts☆80Updated 3 weeks ago
- command-line and python interface to the uniprot database☆10Updated 10 years ago
- a python library for working with flow cytometry data.☆14Updated 10 years ago
- Genomics Research Container Architecture☆48Updated 6 years ago