micans / bash-utilsLinks
Unix terminal histograms, sequencing depth and bar charts (hissyfit). Small data/file munge, morph, find and count scripts/functions in various languages, mostly bash and perl. For apparix see the apparix repository that is a sibling to this one.
☆20Updated last month
Alternatives and similar repositories for bash-utils
Users that are interested in bash-utils are comparing it to the libraries listed below
Sorting:
- Automate new Mac setup☆23Updated 3 years ago
- mirror of GNU Datamash. Send questions/comments/bugs to bug-datamash@gnu.org☆76Updated 3 weeks ago
- A set of Unix shell command line tools for quick and convenient batch processing of tabular text files (a.k.a., tab-delimited, tsv, csv, …☆35Updated 10 years ago
- Library of snakemake rules.☆12Updated 7 years ago
- YAML template engine☆38Updated 2 months ago
- Useful FILe and stream Operations☆45Updated 9 years ago
- A fast, feature-rich CSV/TSV/delimited file viewer for the command line☆99Updated 2 weeks ago
- Documentation of the Snakemake-Profiles project.☆54Updated 3 years ago
- Log shell-commands and used files. Snapshot executed scripts. Fully automatic.☆205Updated 7 months ago
- a simple read-only sequence database, designed for short reads☆66Updated last year
- A cookiecutter template for Snakemake workflows☆60Updated 3 years ago
- Abbreviate strings to short, unique identifiers☆24Updated 3 years ago
- Genomics Research Container Architecture☆48Updated 6 years ago
- Course on good principles & practices in Data Management (https://tinyurl.com/cruk-myrd)☆18Updated 2 years ago
- A library for GNU make to schedule rules as jobs with qsub or sbatch☆11Updated 12 years ago
- Mulled - Automatized Containerized Software Repository☆66Updated last year
- Collection of various scripts☆82Updated last month
- Simple tool to verticalize text delimited files.☆37Updated last year
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- A 'time'-like utility for Unix that measures peak memory usage☆69Updated 13 years ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 8 years ago
- A tutorial for using git-annex to shared large datasets and code within the Lab.☆60Updated 3 years ago
- Convert bioinformatics files to an emoji format.☆23Updated 2 years ago
- A lightweight Python graphing API for genomic features☆15Updated 3 years ago
- Fast, efficient, lossless compression of fastq files☆14Updated 4 years ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- ☆40Updated 9 years ago
- python stuff I use☆19Updated 5 years ago
- command-line bootcamp adventure in your browser☆103Updated 3 years ago
- TRAPPIST: Totally Rad Analysis Pipelines Python Informatics Super Tool (actually, a python-based genomics analysis toolbox)☆14Updated 7 years ago