Comprehensive Benchmark for Protein-Peptide Complex Structure Prediction with AlphaFold3
☆19Sep 4, 2025Updated 10 months ago
Alternatives and similar repositories for PepPCBench
Users that are interested in PepPCBench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆91Oct 23, 2025Updated 9 months ago
- ☆30May 15, 2025Updated last year
- List of papers about Peptide research using Deep Learning☆44Jun 16, 2026Updated last month
- ☆18Apr 4, 2026Updated 3 months ago
- A foundation model approach to guide antimicrobial peptide design in the era of artificial intelligence driven scientific discovery☆57Sep 1, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Protein binding site prediction with transformers☆18Jul 7, 2026Updated 2 weeks ago
- ☆13Jun 7, 2024Updated 2 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Aug 10, 2023Updated 2 years ago
- [ICLR 2025] Hotspot-Driven Peptide Design via Multi-Fragment Autoregressive Extension☆21May 5, 2025Updated last year
- Protein-peptide docking with ESMFold language model☆16May 30, 2026Updated last month
- ☆15Mar 6, 2024Updated 2 years ago
- ☆18May 15, 2026Updated 2 months ago
- pepADMET: a novel computational platform for systematic ADMET evaluation of peptides☆25Oct 21, 2025Updated 9 months ago
- The official implementation of the AAAI'24 paper Cross-Gate MLP with Protein Complex Invariant Embedding is A One-Shot Antibody Designer.☆12Dec 28, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Codebase for Paper: Benchmarking Real-World Applicability of Molecular Generative Models from De novo Design to Lead Optimization with Mo…☆32May 18, 2026Updated 2 months ago
- ☆17Nov 19, 2023Updated 2 years ago
- ☆11Oct 25, 2023Updated 2 years ago
- ☆10Apr 1, 2024Updated 2 years ago
- ☆19Dec 23, 2024Updated last year
- ☆14Jul 12, 2021Updated 5 years ago
- ☆26Jul 14, 2024Updated 2 years ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆49Nov 4, 2025Updated 8 months ago
- High-throughput workflows to calculate surface energies of solids.☆12Jun 24, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An open-source library for the analysis of protein interactions.☆36Dec 5, 2021Updated 4 years ago
- ☆41Jun 14, 2025Updated last year
- Module providing brain MR images pre-processing workflows for Deep Learning.☆16Jul 10, 2026Updated 2 weeks ago
- A distance distribution-based visualization method for atomic pair energy and precise prediction of absolute binding free energy.☆17Feb 4, 2025Updated last year
- ☆29Sep 13, 2024Updated last year
- Coarse-grained and Multi-dimensional Data-driven molecular generation (CMD-GEN). This framework bridges three-dimensional ligand-protein …☆18Sep 13, 2025Updated 10 months ago
- In silico directed evolution of peptide binders with AlphaFold☆274Apr 24, 2026Updated 3 months ago
- ☆26Apr 2, 2024Updated 2 years ago
- coming soon☆28May 9, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆48Jun 17, 2025Updated last year
- A web-based novel drug design platform for up-to-date bioisosteric replacement☆29May 13, 2026Updated 2 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆127Oct 24, 2025Updated 9 months ago
- ☆15Nov 20, 2024Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆81Sep 8, 2023Updated 2 years ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆128Apr 16, 2025Updated last year
- ChemBFN: Bayesian Flow Network Framework for Chemistry Tasks. Developed in Hiroshima University.☆29Jul 17, 2026Updated last week