zhaisilong / PepPCBenchLinks
Comprehensive Benchmark for Protein-Peptide Complex Structure Prediction with AlphaFold3
☆16Updated 2 months ago
Alternatives and similar repositories for PepPCBench
Users that are interested in PepPCBench are comparing it to the libraries listed below
Sorting:
- PackDock: a Diffusion Based Side Chain Packing Model for Flexible Protein-Ligand Docking☆35Updated last month
- ☆36Updated 2 years ago
- ☆32Updated 2 years ago
- DeepRMSD+Vina is a computational framework that integrates ligand binding pose optimization and screening.☆42Updated last year
- FlexPose, a framework for AI-based flexible modeling of protein-ligand binding pose.☆54Updated last year
- ☆13Updated last year
- A deep learning framework for predicting interactions between protein-protein interaction targets and modulators☆14Updated last year
- ☆60Updated last year
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆24Updated last year
- scripts to find PBD structures for cancer driver proteins☆31Updated last week
- ☆25Updated last year
- Learning Structure-based Pocket Representations for Protein-Ligand Interaction Prediction☆34Updated 2 years ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated last year
- List of papers about Peptide research using Deep Learning☆31Updated last month
- ☆27Updated last year
- A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.☆30Updated 3 years ago
- few-shot compound activity regression☆13Updated last year
- ☆39Updated last year
- Tool to design cyclic peptides that mimic proteins and target their binding partners.☆16Updated last year
- ☆34Updated last year
- ☆25Updated 6 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated 2 years ago
- 3D-MCTS: A general structure-based molecule generation method with MCTS.☆44Updated last year
- workflow used to prepare PPB-Affinity database☆28Updated last year
- ☆40Updated 7 months ago
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆84Updated last month
- OnionNet-2 is constructed based on convolutional neural network (CNN) to predict the protein-ligand binding affinity.☆22Updated last year
- ☆31Updated 2 months ago
- ☆15Updated last year
- A distance distribution-based visualization method for atomic pair energy and precise prediction of absolute binding free energy.☆13Updated 9 months ago