zhaisilong / PepPCBenchView external linksLinks
Comprehensive Benchmark for Protein-Peptide Complex Structure Prediction with AlphaFold3
☆19Sep 4, 2025Updated 5 months ago
Alternatives and similar repositories for PepPCBench
Users that are interested in PepPCBench are comparing it to the libraries listed below
Sorting:
- A foundation model approach to guide antimicrobial peptide design in the era of artificial intelligence driven scientific discovery☆49Sep 1, 2025Updated 5 months ago
- ☆17Dec 23, 2024Updated last year
- A distance distribution-based visualization method for atomic pair energy and precise prediction of absolute binding free energy.☆15Feb 4, 2025Updated last year
- The official implementation of the AAAI'24 paper Cross-Gate MLP with Protein Complex Invariant Embedding is A One-Shot Antibody Designer.☆11Dec 28, 2023Updated 2 years ago
- ☆13Jun 7, 2024Updated last year
- ☆77Oct 23, 2025Updated 3 months ago
- ☆30May 15, 2025Updated 8 months ago
- ☆14Jul 12, 2021Updated 4 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Aug 10, 2023Updated 2 years ago
- ☆14Mar 6, 2024Updated last year
- Computationally Restoring the Potency of a Clinical Antibody☆19Mar 1, 2024Updated last year
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆40Jun 17, 2025Updated 7 months ago
- ☆16Nov 19, 2023Updated 2 years ago
- ☆18Jul 14, 2024Updated last year
- ☆41Jun 14, 2025Updated 7 months ago
- ☆47Jun 4, 2025Updated 8 months ago
- Code for our paper "Protein sequence design with a learned potential"☆82Sep 8, 2023Updated 2 years ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆47Nov 4, 2025Updated 3 months ago
- ☆26Apr 2, 2024Updated last year
- In silico directed evolution of peptide binders with AlphaFold☆261Jan 5, 2026Updated last month
- HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…☆62Feb 3, 2026Updated last week
- Official repository for DiffPepBuilder and DiffPepDock tools☆116Oct 24, 2025Updated 3 months ago
- ☆29Mar 11, 2023Updated 2 years ago
- ☆29Jul 10, 2020Updated 5 years ago
- a universal molecular interaction modeling platform based on AlphaFold3, supporting structure prediction and analysis for various recepto…☆49Nov 20, 2025Updated 2 months ago
- Uncertainty-aware prediction of chemical reaction yields with graph neural networks☆25Oct 25, 2024Updated last year
- ☆29Sep 13, 2024Updated last year
- A Multi-Task Generative model for Structure-Based Drug Design☆58Updated this week
- List of papers about Peptide research using Deep Learning☆33Oct 13, 2025Updated 4 months ago
- DeepFrag is a deep convolutional neural network that guides ligand optimization by extending a ligand with a molecular fragment, such tha…☆29Jun 30, 2025Updated 7 months ago
- ☆22Sep 24, 2022Updated 3 years ago
- ☆26Nov 17, 2025Updated 2 months ago
- coming soon☆28May 9, 2023Updated 2 years ago
- a VMD plugin for binding affinity prediction using end-point free energy methods☆28Apr 23, 2016Updated 9 years ago
- ☆113Apr 17, 2023Updated 2 years ago
- ☆65Oct 11, 2022Updated 3 years ago
- ☆116Dec 7, 2022Updated 3 years ago
- ChemBFN: Bayesian Flow Network Framework for Chemistry Tasks. Developed in Hiroshima University.☆28Feb 6, 2026Updated last week
- ☆20Oct 4, 2022Updated 3 years ago