这是一个基于AutoDock-GPU的自动化批量对接程序,只需输入小分子的smiles结构文档(支持批量输入)并且提供蛋白质的网格文件(maps.fld)即可自动完成小分子预处理,分子对接,结果提取等步骤。This project is an automated batch docking pipeline built on AutoDock-GPU, designed to streamline virtual screening workflows.
☆22Oct 13, 2025Updated 6 months ago
Alternatives and similar repositories for BatchDocking--Automated_Workflow_Based_on_AutoDock-GPU
Users that are interested in BatchDocking--Automated_Workflow_Based_on_AutoDock-GPU are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 中药网络药理学,包括预后基因筛选,分子对接,分子验证,各类图表的绘制等,设计了Python和R语言两种版本。The whole process of TCM network pharmacology, including prognostic gene screening,…☆23Nov 20, 2025Updated 4 months ago
- ☆17Jan 10, 2024Updated 2 years ago
- ☆10Jul 9, 2024Updated last year
- Predicting small molecule and RNA target interactions using deep neural networks (Nature Biotechnology, 2026)☆55Jan 5, 2026Updated 3 months ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- 专为NewBie image Exp0.1 模型打造的现代化ComfyUI Web 前端 / A modern ComfyUI web frontend built specifically for the NewBie Image Exp0.1 model.☆39Jan 19, 2026Updated 2 months ago
- RA Synovial Single-cell Multimodal Cell Atlas☆21Mar 6, 2024Updated 2 years ago
- Highly parallel molecular docking pipeline using Vina-GPU (dockerized) + AutoDock Vina CPU☆17Nov 19, 2024Updated last year
- The source code for the new version of the EMBL-EBI BioSamples database☆16Updated this week
- Autodock/Vina plugin for PyMol by Daniel Seeliger☆28Oct 23, 2017Updated 8 years ago
- Using traditional machine learning and deep learning methods to predict stuff from TCGA pathology slides.☆18Sep 24, 2018Updated 7 years ago
- Human Muscle Ageing Cell Atlas☆21Mar 8, 2024Updated 2 years ago
- ☆24Feb 20, 2025Updated last year
- ☆21Mar 4, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- graph generative model for molecule☆42Dec 17, 2019Updated 6 years ago
- Bioinformatics tools for Python☆25Feb 11, 2026Updated 2 months ago
- ☆39Nov 26, 2025Updated 4 months ago
- ☆30May 2, 2024Updated last year
- SPaMD (Scalable Parallel Materials/Molecular Design/Dynamics Studio) is an integrated software platform developed by the research group o…☆30Apr 29, 2025Updated 11 months ago
- ☆65Mar 11, 2023Updated 3 years ago
- A Python spider for TCMSP☆43Feb 24, 2026Updated last month
- Code accompanying the paper "Deep reinforcement learning for multiparameter optimization in de novo drug design"☆72Apr 5, 2021Updated 5 years ago
- ☆38Feb 16, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- 机器学习实战项目,主要运用于各个行业中的需求,实现分类、回归预测分析,主要运用:线性回归、逻辑回归、决策树、聚类分析、支持向量机、朴素贝叶斯、主成分分析等算法;☆56Mar 7, 2024Updated 2 years ago
- ☆40Jul 14, 2023Updated 2 years ago
- 二开项目,多模态 AI 视频分析、本地/云端双引擎 (支持 Ollama 与 OpenAI 兼容 API)、智能关键帧提取与画质分析、高性能音频转录 (Whisper)、AI 摘要报告与动态媒体生成 (视频/GIF)、集成化 WebUI 与实时流式响应、自动化环境配置与系统…☆90Dec 29, 2025Updated 3 months ago
- A Sequence Generation Model for Reaction Diagram Parsing☆111Sep 18, 2023Updated 2 years ago
- ☆50Jun 24, 2022Updated 3 years ago
- 癌症相关学习内容☆50Aug 9, 2019Updated 6 years ago
- ☆45Jan 11, 2024Updated 2 years ago
- Package for storage and analysis of virtual screenings run with AutoDock-GPU and AutoDock Vina☆60Mar 30, 2026Updated 2 weeks ago
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆50Nov 10, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- quantitative PCR analysis in the tidyverse☆56May 31, 2024Updated last year
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆53Feb 16, 2026Updated 2 months ago
- an integrated tool for molecular docking and virtual screening☆80Jun 19, 2025Updated 9 months ago
- A Python tool that automatically cleans, completes, and standardizes BibTeX entries using LLMs and web search.☆176Mar 18, 2026Updated last month
- R package for pathway analysis in scRNA-seq data☆79Aug 17, 2024Updated last year
- (Windows) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina☆69Aug 1, 2022Updated 3 years ago
- R implementation of MULTI-seq sample classification workflow☆66Nov 22, 2023Updated 2 years ago