kirbyju / TCIA_Notebooks
Notebooks for working with The Cancer Imaging Archive datasets
☆78Updated last week
Related projects: ⓘ
- Medical Image Radiomics Processor☆49Updated 3 weeks ago
- Some code for processing and analysing UK Biobank cardiac MR images.☆151Updated 3 years ago
- Computed tomography to body composition (Comp2Comp).☆59Updated 2 months ago
- Data, notebooks, and articles associated with the RSNA AI Deep Learning Lab at RSNA 2021☆77Updated 2 years ago
- Precision medicine toolbox☆59Updated 5 months ago
- Workflow for Optimal Radiomics Classification☆66Updated 2 months ago
- Transparent and reproducible medical image processing pipelines in Python.☆31Updated 2 weeks ago
- Code and evaluation repository for the paper☆73Updated 4 months ago
- primakov / DuneAI-Automated-detection-and-segmentation-of-non-small-cell-lung-cancer-computed-tomography-imagesRepository supporting the original research paper in Nature Communications (Primakov et al. 2022)☆62Updated 2 months ago
- End-to-end Python CT volume preprocessing pipeline to convert raw DICOMs into clean 3D numpy arrays for ML. From paper Draelos et al. "Ma…☆50Updated 3 years ago
- The easiest tool for experimenting with radiomics features.☆36Updated 4 months ago
- TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.☆24Updated 7 months ago
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.☆71Updated last month
- Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: h…☆175Updated 9 months ago
- Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes☆31Updated 3 months ago
- Fully automatic coronary calcium risk assessment using Deep Learning.☆36Updated 3 years ago
- Notebooks, datasets, other content for the Radiology:AI series known as Magicians Corner by Brad Erickson☆31Updated last year
- ☆35Updated 9 months ago
- ⚡ Open-source software for deep learning-based digital pathology☆121Updated 3 months ago
- Self-guided notebook tutorials to help get started with using IDC☆27Updated this week
- ☆59Updated 3 months ago
- ☆51Updated 9 months ago
- A deep learning framework for automated analysis of body composition from abdominal CT☆19Updated 3 months ago
- Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hiera…☆76Updated 2 months ago
- Python Library to handle Input / Output conversion in Dicom <=> Convolutional Neural Network☆16Updated 3 years ago
- An open-source digital pathology based rapid image annotation tool☆74Updated 5 months ago
- A Girder plugin for pathology image annotations and analysis.☆56Updated last week
- Hand-crafted radiomics and deep learning-based radiomcis features extraction.☆77Updated 2 years ago
- Processing Library and Analysis Toolkit for Medical Imaging in Python☆111Updated 3 weeks ago
- This data-centric AI repository implements a robust deep learning method (LFBNet) for fully automated tumor segmentation in whole-body [1…☆30Updated 3 months ago