UMEssen / SALT
Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hierarchical relationships in the data.
☆77Updated 4 months ago
Alternatives and similar repositories for SALT:
Users that are interested in SALT are comparing it to the libraries listed below
- SegmentAnyBone: A Universal Model that Segments Any Bone at Any Location on MRI☆72Updated last month
- Computed tomography to body composition (Comp2Comp).☆70Updated last month
- ☆113Updated 2 weeks ago
- 3D Slicer extension for Segment Anything Model (SAM) developed by Meta☆54Updated 4 months ago
- BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Comp…☆27Updated 4 months ago
- Extension for 3D Slicer for running MONAI Auto3DSeg models☆77Updated 3 weeks ago
- Streamline deep learning experiments using config files☆35Updated last week
- Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imag…☆44Updated last month
- Python package for DICOM-SEG medical segmentation file reading and writing☆84Updated last year
- uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)☆96Updated last month
- TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.☆24Updated last year
- Processing Library and Analysis Toolkit for Medical Imaging in Python☆122Updated 2 months ago
- Baseline AI models for 3D csPCa detection/diagnosis in bpMRI☆46Updated last week
- PyRaDiSe: A Python package for DICOM-RT-based auto-segmentation pipeline construction and DICOM-RT data conversion☆48Updated 2 months ago
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.☆69Updated 6 months ago
- Precision medicine toolbox☆69Updated 10 months ago
- End-to-end Python CT volume preprocessing pipeline to convert raw DICOMs into clean 3D numpy arrays for ML. From paper Draelos et al. "Ma…☆60Updated 4 years ago
- Knee MRI cartilage segmentation model used in 2019 IWOAI segmentation challenge☆17Updated 3 years ago
- This repository employs a deep-learning method for the automated segmentation of total metabolic tumor volume (TMTV) in whole-body [18]F-…☆15Updated 2 months ago
- An AI-powered open-source medical image analysis toolbox☆61Updated 6 months ago
- DICOM RT-Struct to mask☆99Updated 11 months ago
- Transparent and reproducible medical image processing pipelines in Python.☆42Updated this week
- Medical Image Radiomics Processor☆60Updated last week
- Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes☆37Updated 2 weeks ago
- ☆66Updated 10 months ago
- MIST: A simple and scalable end-to-end framework for 3D medical imaging segmentation.☆35Updated 2 months ago
- [Nature Machine Intelligence 2024] Code and evaluation repository for the paper☆97Updated 2 weeks ago
- Website for NA-MIC Project Weeks☆85Updated last week
- nii2dcm: NIfTI to DICOM creation with Python☆67Updated 10 months ago
- The official repository of the 2023 Kidney Tumor Segmentation Challenge (KiTS23)☆92Updated 11 months ago