bhklab / med-imagetoolsLinks
Transparent and reproducible medical image processing pipelines in Python.
☆50Updated 2 months ago
Alternatives and similar repositories for med-imagetools
Users that are interested in med-imagetools are comparing it to the libraries listed below
Sorting:
- Precision medicine toolbox☆70Updated last year
- Medical Image Radiomics Processor☆71Updated last month
- Workflow for Optimal Radiomics Classification☆79Updated last month
- Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes☆43Updated 2 months ago
- Computed tomography to body composition (Comp2Comp).☆95Updated 3 weeks ago
- Slicer3D extension for rating using Likert-type score Deep-learning generated segmentations, with segment editor functionality. Created t…☆26Updated 3 months ago
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.☆87Updated 3 years ago
- The easiest tool for experimenting with radiomics features.☆41Updated last year
- Hierarchical probabilistic 3D U-Net, with attention mechanisms (—𝘈𝘵𝘵𝘦𝘯𝘵𝘪𝘰𝘯 𝘜-𝘕𝘦𝘵, 𝘚𝘌𝘙𝘦𝘴𝘕𝘦𝘵) and a nested decoder str…☆43Updated 3 years ago
- DICOM RT-Struct to mask☆101Updated last year
- Processing Library and Analysis Toolkit for Medical Imaging in Python☆137Updated 4 months ago
- BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Comp…☆51Updated 2 months ago
- Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hiera…☆81Updated last year
- TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.☆31Updated last year
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.☆91Updated 2 weeks ago
- An AI-powered open-source medical image analysis toolbox☆63Updated last year
- Stores the MHub models dockerfiles and scripts.☆10Updated 5 months ago
- Fully automatic coronary calcium risk assessment using Deep Learning.☆43Updated 4 years ago
- Hand-crafted radiomics and deep learning-based radiomcis features extraction.☆88Updated 3 years ago
- Automatic sorting of brain MRI scans by scan type☆26Updated 8 months ago
- RadQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) and computed tomography (C…☆106Updated 2 months ago
- ☆42Updated 2 years ago
- ☆76Updated last month
- Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and Simpl…☆101Updated 10 months ago
- Visualization for radiomics feature generated by pyradiomics☆54Updated 9 months ago
- Some code for processing and analysing UK Biobank cardiac MR images.☆180Updated 3 months ago
- Python package for DICOM-SEG medical segmentation file reading and writing☆85Updated 2 years ago
- End-to-end Python CT volume preprocessing pipeline to convert raw DICOMs into clean 3D numpy arrays for ML. From paper Draelos et al. "Ma…☆72Updated 4 years ago
- Self-guided notebook tutorials to help get started with IDC☆38Updated this week
- A project to provide custom sorting and renaming of dicom files☆79Updated 5 months ago