bhklab / med-imagetoolsLinks
Transparent and reproducible medical image processing pipelines in Python.
☆56Updated 2 weeks ago
Alternatives and similar repositories for med-imagetools
Users that are interested in med-imagetools are comparing it to the libraries listed below
Sorting:
- Precision medicine toolbox☆70Updated last year
- Medical Image Radiomics Processor☆77Updated this week
- Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes☆42Updated 3 weeks ago
- Computed tomography to body composition (Comp2Comp).☆106Updated last month
- DICOM RT-Struct to mask☆103Updated last year
- Workflow for Optimal Radiomics Classification☆81Updated last month
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.☆89Updated 3 years ago
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.☆99Updated 4 months ago
- The easiest tool for experimenting with radiomics features.☆41Updated last year
- ☆79Updated 5 months ago
- Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hiera…☆81Updated 2 weeks ago
- TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.☆32Updated 2 years ago
- This repository contains code used to prepare the LUMIERE Glioblastoma dataset.☆34Updated last year
- Brain extraction in presence of abnormalities, using single and multiple MRI modalities☆38Updated 10 months ago
- Processing Library and Analysis Toolkit for Medical Imaging in Python☆146Updated 8 months ago
- PyRaDiSe: A Python package for DICOM-RT-based auto-segmentation pipeline construction and DICOM-RT data conversion☆53Updated last week
- 💥 Command line tool for automatic liver parenchyma and liver vessel segmentation in CT using a pretrained deep learning model☆73Updated last year
- Stores the MHub models dockerfiles and scripts.☆11Updated 2 weeks ago
- Hierarchical probabilistic 3D U-Net, with attention mechanisms (—𝘈𝘵𝘵𝘦𝘯𝘵𝘪𝘰𝘯 𝘜-𝘕𝘦𝘵, 𝘚𝘌𝘙𝘦𝘴𝘕𝘦𝘵) and a nested decoder str…☆43Updated 4 years ago
- Docker for running stroke lesion core segmentation☆30Updated 5 years ago
- BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Comp…☆59Updated 3 months ago
- Self-guided notebook tutorials to help get started with IDC☆43Updated last week
- Slicer3D extension for rating using Likert-type score Deep-learning generated segmentations, with segment editor functionality. Created t…☆26Updated 7 months ago
- preprocessing tools for multi-modal 3D brain imaging☆30Updated 2 weeks ago
- Robust Brain Extraction Tool for CT Head Images☆51Updated 5 years ago
- Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and Simpl…☆106Updated this week
- A project to provide custom sorting and renaming of dicom files☆85Updated 9 months ago
- Hand-crafted radiomics and deep learning-based radiomcis features extraction.☆89Updated 3 years ago
- Automatic Segmentation of Vestibular Schwannoma with MONAI (PyTorch)☆52Updated last month
- Fully automatic coronary calcium risk assessment using Deep Learning.☆46Updated 4 years ago