johanneskoester / awesome-single-cellLinks
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
☆12Updated 7 years ago
Alternatives and similar repositories for awesome-single-cell
Users that are interested in awesome-single-cell are comparing it to the libraries listed below
Sorting:
- A Rust library and command line tool for working with genomic ranges and their data.☆100Updated last year
- Single-cell analysis methods in Rust☆28Updated last month
- bedtools-like functionality for interval sets in rust☆55Updated 4 months ago
- A high-performance BigWig and BigBed library in Rust☆108Updated last month
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- An efficient CLI to extract sequences from the SRA☆117Updated 3 weeks ago
- gia: Genomic Interval Arithmetic☆63Updated last year
- A library of common biomedical types.☆40Updated 7 months ago
- Single-Cell RNA-seq pseudo-aligner☆52Updated last year
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆46Updated last month
- Command line utility for manipulating Illumina-generated FASTQ files.☆93Updated 2 months ago
- VDJ Clonotyping & Analysis Tools☆50Updated 9 months ago
- Container class to represent genomic locations and support genomic analysis☆27Updated last week
- Builds a PEP from SRA or GEO accessions☆54Updated last week
- Making bioinformatics fun again☆74Updated this week
- FASTA and FASTQ parsing in Rust☆80Updated 8 months ago
- ☆39Updated 3 weeks ago
- De Bruijn graphs in Rust☆71Updated last year
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Updated 4 years ago
- A Github action for running a Snakemake workflow☆62Updated last week
- Data Science Operations (dso) command line tool☆44Updated 3 months ago
- Rust UMI Directional Adjacency Deduplicator☆15Updated 6 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- gatk4 RNA variant calling pipeline☆55Updated last week
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Proteomics label-free quantification (LFQ) analysis pipeline☆37Updated 10 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 7 months ago
- FRASER - Find RAre Splicing Events in RNA-seq☆51Updated last month
- An interactive learning resource for next-generation sequencing (NGS) techniques☆34Updated 7 years ago
- A rust framework to make using alevin-fry even simpler☆60Updated 7 months ago