List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
☆12Jun 5, 2018Updated 8 years ago
Alternatives and similar repositories for awesome-single-cell
Users that are interested in awesome-single-cell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Nov 19, 2024Updated last year
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆26Mar 7, 2020Updated 6 years ago
- Large-scale sparse matrix factorization for Rust☆11Apr 18, 2026Updated 5 months ago
- An R package for annotation of circular RNAs☆11Mar 30, 2020Updated 6 years ago
- A rust crate for tailoring random forests and decision trees to *your* data set.☆12Aug 4, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 9 years ago
- PURE-LET image deconvolution☆11Dec 30, 2019Updated 6 years ago
- Performance-critical tools to manipulate, analyze, and process genomic interval data☆30Updated this week
- Unsupervised spectral unmixing by minimum-volume-constrained non-negative matrix factorization (MVC-NMF)☆11Apr 9, 2019Updated 7 years ago
- Repository holding the code for the drugfindR R package☆13Updated this week
- RMarkdown to Github Jekyll md☆15Dec 22, 2017Updated 8 years ago
- 每日新闻.☆13Oct 16, 2025Updated 11 months ago
- Advanced R programming course at EMBL, 3-4 April 2017☆11Apr 5, 2017Updated 9 years ago
- ITS region extraction for long-read amplicon sequencing☆23Aug 26, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Notes and code for learning Random Forests☆13Nov 17, 2022Updated 3 years ago
- Source code of the R packge BgeeDB to use data from the Bgee database☆16May 7, 2026Updated 4 months ago
- Simulating Sequence Evolution☆10Jul 9, 2024Updated 2 years ago
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 7 years ago
- Site for Genomic Data Science Class☆17Sep 7, 2015Updated 11 years ago
- JavaScript code for X-ray crystallography applications☆15May 3, 2016Updated 10 years ago
- Documentation for PEP specification and all PEPkit software☆10Updated this week
- Affinity Propagation for Sparse Similarities☆22Oct 30, 2010Updated 15 years ago
- R Package as interface to rsync☆20Oct 20, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆31May 28, 2019Updated 7 years ago
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Aug 12, 2026Updated last month
- ☆16Apr 12, 2026Updated 5 months ago
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- Analysing Capture Seq Count Data☆13Jun 11, 2018Updated 8 years ago
- Repository for the wireshark plugin development project of the AMOS 16 course☆10Jan 6, 2017Updated 9 years ago
- various tools to download, convert and process the full text of scientific articles☆10Apr 2, 2024Updated 2 years ago
- Spectral unmixing of highly mixed multispectral flow and image cytometry data.☆17Mar 15, 2023Updated 3 years ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆21Jul 19, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast Brainfuck interpreter in Rust.☆20Sep 15, 2020Updated 6 years ago
- PyCharm plugin to execute python code☆12Jul 29, 2025Updated last year
- A fork of HeavenMS, to be used as the server side of MortalClient (FLOSS v83 MapleStory client)☆10Oct 23, 2018Updated 7 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago
- Allows i3 to move focus differently depending on the focused window☆14Dec 11, 2018Updated 7 years ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 9 months ago
- Play sudoku on the command line☆19Oct 16, 2020Updated 5 years ago