Alternatives and similar repositories for imagej-matlab

Users that are interested in imagej-matlab are comparing it to the libraries listed below

• DylanMuir / ReadImageJROI
  Matlab function to import ROIs from ImageJ
  ☆27Updated 5 years ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated 2 weeks ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆86Updated this week
• NICALab / SUPPORT
  Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
  ☆85Updated last month
• PreibischLab / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆74Updated last month
• flatironinstitute / NoRMCorre
  Matlab routines for online non-rigid motion correction of calcium imaging data
  ☆152Updated 3 years ago
• hroi-aim / multiviewSR
  ☆14Updated 4 years ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆124Updated 3 weeks ago
• sakoho81 / miplib
  A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.
  ☆80Updated 3 weeks ago
• FlowRegSuite / flow_registration
  Flow-Registration toolbox for 2P motion compensation
  ☆25Updated this week
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆60Updated 3 months ago
• imodpasteur / ZOLA-3D
  Zernike Optimized Localization Algorithm for 3D single molecule localizations
  ☆19Updated 2 years ago
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆15Updated last month
• AndrewGYork / tools
  Things we use regularly
  ☆29Updated last month
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆52Updated this week
• Vaa3D / release
  Binary releases of Vaa3D and related software components
  ☆46Updated last year
• saalfeldlab / stitching-spark
  Reconstruct big images from overlapping tiled images on a Spark cluster.
  ☆34Updated last year
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• rharkes / Fast_Tiff_Write
  A fast multi-image tiff writer for Matlab
  ☆18Updated last year
• tferr / Scripts
  Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
  ☆26Updated 3 years ago
• eguomin / regDeconProject
  code of the registration and deconvolution project
  ☆35Updated 4 years ago
• hammerlab / flowdec
  TensorFlow Deconvolution for Microscopy Data
  ☆90Updated 3 years ago
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆24Updated 2 weeks ago
• tlambert03 / LLSpy
  Lattice light-sheet post-processing utility.
  ☆29Updated 2 weeks ago
• mesoSPIM / mesoSPIM-control
  Image acquisition software for mesoSPIM light-sheet microscopes.
  ☆43Updated last week
• SebastienTs / MosaicExplorerJ
  An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets
  ☆13Updated 3 years ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆67Updated last week
• AiviaCommunity / 3D-RCAN
  Three-dimensional residual channel attention networks
  ☆55Updated 2 years ago
• vazirilab / SID
  Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)
  ☆28Updated 5 years ago