boxorange / BioIE-LLMLinks
Biological Information Extraction from Large Language Models (LLMs)
☆12Updated last week
Alternatives and similar repositories for BioIE-LLM
Users that are interested in BioIE-LLM are comparing it to the libraries listed below
Sorting:
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆34Updated last month
- SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks (Scientific Reports)☆64Updated 5 years ago
- Bi-Level Graph Neural Networks for Drug-Drug Interaction Prediction. ICML 2020 Graph Representation Learning and Beyond (GRL+) Workshop☆30Updated 4 years ago
- TIP: Tri-graph Interaction Propagation model for Polypharmacy Side Effect Prediction (GRL@NeurIPS, 2019)☆24Updated 2 years ago
- ☆11Updated 5 years ago
- Implementation of GEFA: Early Fusion Approach in Drug-Target Affinity Prediction☆21Updated 4 years ago
- [Bioinformatics 2021] This is the repo for the paper `SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summa…☆86Updated 10 months ago
- Source code for TKDE'22 "KG-MTL: Knowledge Graph Enhanced Multi-Task Learning for Molecular Interaction"☆28Updated 2 years ago
- Source code for ICLR 2021 paper: "Molecule Optimization by Explainable Evolution"☆29Updated 4 years ago
- Drug-target interaction prediction using deepWalk node embedding algorithm on drugBank☆11Updated 4 years ago
- ☆18Updated 3 months ago
- PyTorch implementation of "TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarit…☆24Updated 3 years ago
- Code for the papers: "Graph Representation Learning for Multi-Task Settings: a Meta-Learning Approach", "A Meta-Learning Approach for Gra…☆18Updated 3 years ago
- Graph Transformers for Large Graphs☆21Updated last year
- ☆55Updated 4 years ago
- Multi-view Graph Contrastive Representation Learning for Drug-drug Interaction Prediction☆44Updated 3 years ago
- Code and data for the Nature Machine Intelligence paper "Knowledge graph-enhanced molecular contrastive learning with functional prompt".☆122Updated last year
- ☆34Updated 4 years ago
- Communicative Subgraph Representation Learning for Multi-Relational Inductive Drug-Gene Interaction Prediction☆11Updated 2 years ago
- Work on designing a graph co-attention algorithm.☆18Updated last year
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆47Updated last year
- DeepDrug: A general graph-based deep learning framework for drug relation prediction☆60Updated 2 years ago
- [ACL 2023 Oral] Clinical Note Owns its Hierarchy: Multi-Level Hypergraph Neural Networks for Patient-Level Representation Learning☆9Updated last year
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆17Updated last week
- ☆66Updated last year
- ☆19Updated last year
- The official code implementation for DREAMwalk in Python.☆20Updated last year
- An end-to-end heterogeneous graph representation learning-based framework for drug-target interaction prediction☆30Updated 2 years ago
- Graph Positional and Structural Encoder☆50Updated 4 months ago
- ☆12Updated 2 years ago