Alternatives and similar repositories for gnomex

Users that are interested in gnomex are comparing it to the libraries listed below

• maxplanck-ie / parkour
  Moved to: https://github.com/maxplanck-ie/parkour2
  ☆33Updated 2 years ago
• Steven-N-Hart / vcf-miner
  VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files
  ☆37Updated 5 years ago
• workflux / workflUX
  An open-source, cloud-ready web application for simplified deployment of big data workflows.
  ☆33Updated last month
• s-andrews / SeqMonk
  SeqMonk NGS visualisation and analysis tool
  ☆49Updated this week
• varfish-org / varfish-server
  VarFish: comprehensive DNA variant analysis for diagnostics and research
  ☆47Updated this week
• liyao001 / BioQueue
  A novel pipeline framework to accelerate bioinformatics analysis
  ☆29Updated 2 years ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆36Updated this week
• openwdl / workflow-template-wdl
  ☆9Updated 8 months ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• malariagen / pipelines
  Pipelines for processing malaria parasite and mosquito genome sequence data.
  ☆15Updated 7 months ago
• refgenie / refgenie
  Reference genome resource manager
  ☆76Updated last year
• ccmbioinfo / crg2
  Research pipeline for exploring clinically relevant genomic variants
  ☆16Updated this week
• s-andrews / BamQC
  Mapped QC analysis program
  ☆44Updated 7 years ago
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆44Updated last year
• OpenOmics / genome-seek
  Clinical Whole Genome and Exome Sequencing Pipeline
  ☆23Updated 3 months ago
• RNAcentral / rnacentral-webcode
  RNAcentral website source code
  ☆33Updated last week
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆49Updated 4 years ago
• PapenfussLab / PathOS
  PathOS is a clinical application for filtering, analysing and reporting on NGS variants
  ☆28Updated 4 years ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated last year
• wassermanlab / Variant_catalogue_pipeline
  Variant catalogue pipeline
  ☆25Updated last month
• CRISPRlab / CRISPRdisco
  CRISPR discovery pipeline
  ☆34Updated 6 years ago
• macarthur-lab / omim
  Repo for downloading and storing OMIM data
  ☆19Updated 8 years ago
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆31Updated this week
• gear-genomics / indigo
  Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
  ☆36Updated 7 months ago
• mckennalab / Circuitseq
  Nanopore Plasmid Sequencing
  ☆32Updated last year
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆54Updated last year
• moonso / vcf_parser
  Simple vcf parser, based on PyVCF
  ☆46Updated 6 years ago
• y9c / cfutils
  🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing dat…
  ☆23Updated last month
• mtw / Bio-ViennaNGS
  A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis
  ☆23Updated 6 years ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆47Updated this week