ghorbanimahdi73 / GraphVampNetLinks
☆15Updated 3 years ago
Alternatives and similar repositories for GraphVampNet
Users that are interested in GraphVampNet are comparing it to the libraries listed below
Sorting:
- ☆35Updated 9 months ago
- ☆65Updated last year
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆30Updated last year
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆36Updated 2 weeks ago
- Temperature generator for Replica Exchange MD simulations☆28Updated 2 years ago
- We provide a set of scripts to calculate native contacts from a MD. Native contacts are determined according to the overlap and rCSU appr…☆16Updated 11 months ago
- Enhanced sampling methods for molecular dynamics simulations☆36Updated 2 years ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆45Updated 4 years ago
- Package for consistent reporting of relative free energy results☆39Updated last month
- Automatic Mutual Information Noise Omission☆15Updated 7 months ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆23Updated 3 years ago
- A comprehensive toolkit for predicting free energies☆53Updated 4 months ago
- Random Acceleration Molecular Dynamics in GROMACS☆37Updated 10 months ago
- ☆43Updated 3 years ago
- A python implementation of the string method with swarms of trajectories using GROMACS☆18Updated 2 years ago
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆32Updated 5 years ago
- OpenMM plugin to interface with PLUMED☆66Updated 3 months ago
- ☆11Updated 11 months ago
- Bayesian Multistate Bennett Acceptance Ratio Method☆13Updated 3 weeks ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆34Updated last year
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated 2 years ago
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆16Updated 2 years ago
- RESP with inter- and intra-molecular constraints in Psi4.☆31Updated 2 years ago
- Simulation-Enabled Estimation of Kinetic Rates - Version 2☆29Updated 3 months ago
- Useful Collective Variables for OpenMM☆13Updated last year
- Python package built on NAMD/OpenMM and OpenMMTools to perform binding free energy calculations using the TIES protocol.☆32Updated last year
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆69Updated 3 weeks ago
- Given an RDKit molecule that does not sanitise, correct it until it does☆41Updated last year
- ☆54Updated 2 years ago
- Supporting data for the manuscript "Deep learning the slow modes for rare events sampling"☆20Updated last year