ghorbanimahdi73 / GraphVampNetLinks
☆15Updated 3 years ago
Alternatives and similar repositories for GraphVampNet
Users that are interested in GraphVampNet are comparing it to the libraries listed below
Sorting:
- Enhanced sampling methods for molecular dynamics simulations☆41Updated 2 years ago
- ☆39Updated last year
- ☆65Updated 3 months ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Updated 4 years ago
- ☆22Updated 4 months ago
- Force Fields☆66Updated 9 months ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆41Updated 2 weeks ago
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆31Updated 2 years ago
- OpenMM plugin to interface with PLUMED☆69Updated 8 months ago
- Implicit Solvent Approach Based on Generalised Born and Transferable Graph Neural Networks for Molecular Dynamics Simulations☆50Updated 6 months ago
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆71Updated last month
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- Bayesian Multistate Bennett Acceptance Ratio Method☆15Updated 2 weeks ago
- Temperature generator for Replica Exchange MD simulations☆29Updated 2 years ago
- Examples of applications of pymbar to various problems in simulation and experiment☆23Updated 10 years ago
- The official repository of Uni-pKa☆83Updated 7 months ago
- Supporting data for the manuscript "Deep learning the slow modes for rare events sampling"☆21Updated last year
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆87Updated 3 months ago
- Random Acceleration Molecular Dynamics in GROMACS☆40Updated last year
- Statistical models for biomolecular dynamics☆38Updated 6 months ago
- Analysis framework of dissipation-corrected targeted molecular dynamics (dcTMD) simulations.☆15Updated 3 weeks ago
- Collective variables by artificial neural networks☆10Updated 3 years ago
- ☆40Updated 2 years ago
- We provide a set of scripts to calculate native contacts from a MD. Native contacts are determined according to the overlap and rCSU appr…☆16Updated last year
- An OpenMM plugin that implements the Alchemical Transfer Potential☆39Updated 2 years ago
- A package for all physics based/related models☆53Updated last year
- A fast solver for large scale MBAR/UWHAM equations☆40Updated last year
- MDANCE is a flexible n-ary clustering package for all applications.☆82Updated this week
- A Deep Neural Network to predict small molecule torsion energy profiles with the accuracy of QM☆39Updated 2 years ago
- Density based object completion over PBC.☆30Updated 10 months ago