openforcefield / ccpbiosim-2023Links
Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week
☆31Updated 2 years ago
Alternatives and similar repositories for ccpbiosim-2023
Users that are interested in ccpbiosim-2023 are comparing it to the libraries listed below
Sorting:
- ☆39Updated last year
- This pipeline is executing a RE-EDS run for relative free energy calculations. It can be used for example for calculation of hydration fr…☆32Updated 5 months ago
- ☆30Updated this week
- Package for consistent reporting of relative free energy results☆40Updated this week
- Set up relative free energy calculations using a common scaffold☆24Updated 2 months ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- Standalone charge assignment from Espaloma framework.☆43Updated last month
- Algorithms for various Network Layouts and Tooling for planning FE Calculations☆20Updated last week
- Python code for generating Boresch restraints from MD simulations☆22Updated last month
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Updated 4 years ago
- Machine Learning model for molecular micro-pKa prediction☆44Updated last year
- A Deep Neural Network to predict small molecule torsion energy profiles with the accuracy of QM☆39Updated 2 years ago
- Robust Equilibration Detection☆26Updated 2 months ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆42Updated 3 weeks ago
- Repository for the 2024 OpenFE industry benchmark efforts☆25Updated last month
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆38Updated 2 years ago
- Recipes and protocols for molecular free energy calculations using the openmmtools/perses and Open Free Energy toolkits☆14Updated last week
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆70Updated last week
- An OpenMM plugin that implements the Alchemical Transfer Potential☆39Updated 2 years ago
- ☆28Updated last year
- This is a SnakeMake based workflow for ABFE calculations that can be easily scaled in a high-throughput manner via Slurm for example.☆57Updated 7 months ago
- Bayesian Multistate Bennett Acceptance Ratio Method☆15Updated 3 weeks ago
- Exploratory work on free energy calculations with GROMACS using "separated topologies" approach (Rocklin et al., 2013).☆28Updated 11 months ago
- Random Acceleration Molecular Dynamics in GROMACS☆40Updated last year
- ☆65Updated 3 months ago
- Examples of applications of pymbar to various problems in simulation and experiment☆23Updated 10 years ago
- Temperature generator for Replica Exchange MD simulations☆29Updated 2 years ago
- Codes to use funnel-metadynamics and funnel metadynamics automated protocol☆30Updated 3 years ago
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆18Updated 2 years ago
- Optimization of OpenFF parameters using ForceBalance and QCArchive☆11Updated 4 years ago