MDAnalysis / WorkshopMDMLEdinburgh2022Links
☆65Updated 5 months ago
Alternatives and similar repositories for WorkshopMDMLEdinburgh2022
Users that are interested in WorkshopMDMLEdinburgh2022 are comparing it to the libraries listed below
Sorting:
- ☆40Updated last year
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Updated 4 years ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- MDANCE: O(N) clustering for molecular dynamics. Process 1.5M frames in 40min. 8 specialized algorithms.☆96Updated last month
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆71Updated last month
- Random Acceleration Molecular Dynamics in GROMACS☆42Updated last year
- OpenMM plugin to interface with PLUMED☆73Updated last month
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆39Updated 2 years ago
- Set up relative free energy calculations using a common scaffold☆24Updated 4 months ago
- Python code for generating Boresch restraints from MD simulations☆22Updated 2 months ago
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆89Updated 5 months ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆39Updated 2 years ago
- ☆59Updated 3 weeks ago
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆18Updated 2 years ago
- Analysis of non-covalent interactions in MD trajectories☆66Updated 11 months ago
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆31Updated 2 years ago
- Repository for the 2024 OpenFE industry benchmark efforts☆28Updated 2 months ago
- An Open-Source Molecular Builder and Free Energy Preparation Workflow☆133Updated last month
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆72Updated this week
- Force Fields☆66Updated 11 months ago
- Best practice document for alchemical free energy calculations going to livecoms journal☆80Updated last week
- Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium☆45Updated 2 months ago
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆34Updated 6 months ago
- Density based object completion over PBC.☆30Updated last year
- LoQI: Low Energy QM Informed Conformer Generation☆46Updated last month
- Temperature generator for Replica Exchange MD simulations☆29Updated 3 years ago
- Martini 3 small molecule database☆68Updated 2 months ago
- We provide a set of scripts to calculate native contacts from a MD. Native contacts are determined according to the overlap and rCSU appr…☆16Updated last year
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆42Updated last month
- Enable cheminformatics and quantum chemistry☆77Updated last year