mqcomplab / MDANCELinks
MDANCE is a flexible n-ary clustering package for all applications.
☆69Updated 3 weeks ago
Alternatives and similar repositories for MDANCE
Users that are interested in MDANCE are comparing it to the libraries listed below
Sorting:
- ☆65Updated last week
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- Module containing scripts to perform multiple comparison simultaneously and getting the exact same value as the average pairwise comparis…☆44Updated last month
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆48Updated 4 years ago
- The official repository of Uni-pKa☆65Updated 4 months ago
- The public versio☆61Updated 2 years ago
- ☆54Updated 2 years ago
- An Open-Source Molecular Builder and Free Energy Preparation Workflow☆127Updated 3 weeks ago
- Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium☆40Updated 3 weeks ago
- Tutorial on the setup and simulation of a membrane protein with AMBER Lipid21 and PACKMOL-Memgen☆66Updated last year
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆83Updated 2 weeks ago
- This is a SnakeMake based workflow for ABFE calculations that can be easily scaled in a high-throughput manner via Slurm for example.☆50Updated 4 months ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆40Updated last week
- Machine Learning model for molecular micro-pKa prediction☆43Updated 10 months ago
- Force Fields☆64Updated 6 months ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated 2 years ago
- Random Acceleration Molecular Dynamics in GROMACS☆38Updated last year
- Mordred port in cpp☆49Updated 5 months ago
- ☆14Updated 7 months ago
- A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism☆61Updated last year
- BitBIRCH clustering algorithm☆89Updated 2 months ago
- ☆32Updated last year
- ☆67Updated 2 years ago
- Automated Adaptive Absolute alchemical Free Energy calculator☆101Updated 3 weeks ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆37Updated last year
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆71Updated 6 months ago
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆70Updated 2 weeks ago
- 📐 Symmetry-corrected RMSD in Python☆100Updated 2 months ago
- Different run and analysis scripts as described in the research guides.☆13Updated 3 years ago
- ☆54Updated last month