DingGroup / BayesMBARLinks
Bayesian Multistate Bennett Acceptance Ratio Method
☆16Updated 3 months ago
Alternatives and similar repositories for BayesMBAR
Users that are interested in BayesMBAR are comparing it to the libraries listed below
Sorting:
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆31Updated 2 years ago
- Temperature generator for Replica Exchange MD simulations☆30Updated 3 years ago
- This pipeline is executing a RE-EDS run for relative free energy calculations. It can be used for example for calculation of hydration fr…☆32Updated 7 months ago
- Set up relative free energy calculations using a common scaffold☆24Updated 5 months ago
- ☆31Updated this week
- ☆13Updated 6 months ago
- Automatic Martini force field generator for small organic molecules (up to 25 heavy atoms), Martini 3 compatible☆33Updated last month
- Python package built on NAMD/OpenMM and OpenMMTools to perform binding free energy calculations using the TIES protocol.☆34Updated 2 years ago
- ☆44Updated 3 years ago
- Machine Learning model for molecular micro-pKa prediction☆49Updated last year
- ☆42Updated last year
- A tutorials suite for BioSimSpace.☆34Updated 3 months ago
- Absolute solvation free energy calculations with OpenFF and OpenMM☆26Updated last year
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆74Updated 2 years ago
- Exploratory work on free energy calculations with GROMACS using "separated topologies" approach (Rocklin et al., 2013).☆28Updated last year
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆42Updated 2 months ago
- Python code for generating Boresch restraints from MD simulations☆22Updated 3 months ago
- Repository for the 2024 OpenFE industry benchmark efforts☆29Updated 3 months ago
- Random Acceleration Molecular Dynamics in GROMACS☆43Updated last year
- A Deep Neural Network to predict small molecule torsion energy profiles with the accuracy of QM☆39Updated 2 years ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆24Updated 4 years ago
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆34Updated 7 months ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated 2 years ago
- Entropy from PDB conformational ensembles☆11Updated last year
- Standalone charge assignment from Espaloma framework.☆46Updated 3 months ago
- Funnel maker is a set of scripts that sets up funnel metadynamics simulations for protein-ligand binding with PLUMED and OpenMM.☆15Updated 3 weeks ago
- ☆25Updated 2 years ago
- A python implementation of the string method with swarms of trajectories using GROMACS☆18Updated 3 years ago
- Robust Equilibration Detection☆26Updated 4 months ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Updated 4 years ago