DingGroup / BayesMBARLinks
Bayesian Multistate Bennett Acceptance Ratio Method
☆15Updated 3 weeks ago
Alternatives and similar repositories for BayesMBAR
Users that are interested in BayesMBAR are comparing it to the libraries listed below
Sorting:
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆31Updated 2 years ago
- This pipeline is executing a RE-EDS run for relative free energy calculations. It can be used for example for calculation of hydration fr…☆32Updated 5 months ago
- Automatic Martini force field generator for small organic molecules (up to 25 heavy atoms), Martini 3 compatible☆26Updated 3 months ago
- ☆44Updated 3 years ago
- Set up relative free energy calculations using a common scaffold☆24Updated 2 months ago
- Temperature generator for Replica Exchange MD simulations☆29Updated 2 years ago
- ☆30Updated this week
- A tutorials suite for BioSimSpace.☆30Updated 3 weeks ago
- Examples of applications of pymbar to various problems in simulation and experiment☆23Updated 10 years ago
- Exploratory work on free energy calculations with GROMACS using "separated topologies" approach (Rocklin et al., 2013).☆28Updated 11 months ago
- Machine Learning model for molecular micro-pKa prediction☆44Updated last year
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆42Updated 3 weeks ago
- Standalone charge assignment from Espaloma framework.☆43Updated last month
- Repository for the 2024 OpenFE industry benchmark efforts☆25Updated last month
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- Absolute solvation free energy calculations with OpenFF and OpenMM☆25Updated 11 months ago
- Unified Free Energy Dynamics (UFED) simulations with OpenMM☆35Updated 2 months ago
- Python package built on NAMD/OpenMM and OpenMMTools to perform binding free energy calculations using the TIES protocol.☆33Updated last year
- ☆39Updated last year
- A Deep Neural Network to predict small molecule torsion energy profiles with the accuracy of QM☆39Updated 2 years ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Updated 4 years ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆24Updated 4 years ago
- Python code for generating Boresch restraints from MD simulations☆22Updated last month
- Dynamic pharmacophore modeling of molecular interactions☆36Updated last year
- Package for consistent reporting of relative free energy results☆40Updated this week
- Funnel maker is a set of scripts that sets up funnel metadynamics simulations for protein-ligand binding with PLUMED and OpenMM.☆15Updated 2 years ago
- OpenMM scripts for polarisable molecular dynamics with the AMOEBA force field☆27Updated 5 years ago
- ☆13Updated 3 months ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆38Updated 2 years ago
- Robust Equilibration Detection☆26Updated 2 months ago