PyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.
☆93Jun 30, 2026Updated 3 weeks ago
Alternatives and similar repositories for PyRate
Users that are interested in PyRate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clade age estimation using a Bayesian Brownian bridge model☆15Sep 3, 2025Updated 10 months ago
- R library for analyzing, time-scaling and simulating phylogenies of extinct/fossil lineages. Also plots diversity curves for stratigraphi…☆22Apr 1, 2026Updated 3 months ago
- R package for analysing diversity dynamics with fossil occurrences☆12Dec 1, 2025Updated 7 months ago
- An Approximate Bayesian Computation Framework for inferring patterns of cultural transmission from frequency data☆12May 14, 2020Updated 6 years ago
- signatselect: Identifying signatures of selection☆12Dec 3, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R interface to the Paleobiology Database☆47Sep 2, 2025Updated 10 months ago
- R package for simulating fossil data on phylogenetic trees under mechanistic models of preservation and sampling☆12Jun 3, 2026Updated last month
- R package for Bayesian and Frequentist Aoristic inference☆12Sep 7, 2024Updated last year
- An R package for the calculation of taxonomic, phenotypic and phylogenetic metrics across grid cells.☆16Aug 20, 2025Updated 11 months ago
- Bayesian species delimitation integrating genes and traits☆12Aug 17, 2021Updated 4 years ago
- Measuring disparity with R☆29Jun 16, 2026Updated last month
- ☆12Sep 11, 2023Updated 2 years ago
- ☆10Dec 8, 2021Updated 4 years ago
- Source codes for the paper "The effect of equilibrium assumptions on reconstructing patterns of cultural transmission from frequency data…☆12Nov 30, 2016Updated 9 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- The Phylogenetic Atlas of Mammal Macroecology☆22Sep 16, 2024Updated last year
- R package for year-based time scales☆15Jan 14, 2026Updated 6 months ago
- Kernel Logistic Regression on Focal Mean Embeddings☆16Dec 30, 2025Updated 6 months ago
- Computer-Assisted Shape Classification of Archaeological Pottery Fragments☆13Feb 9, 2021Updated 5 years ago
- cgenie Earth system model☆15Feb 14, 2024Updated 2 years ago
- Bayesian neural networks using Numpy and Scipy☆11Nov 24, 2025Updated 7 months ago
- R Package - Aoristic analysis of archaeological data☆10Jan 12, 2026Updated 6 months ago
- Self-Updating Platform for the Estimation of Rates of Speciation, Migration And Relationships of Taxa☆17Jun 24, 2020Updated 6 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- DPPDIV☆12Apr 10, 2020Updated 6 years ago
- Datasets for Teaching Archaeology and Palaeontology - Moved to https://codeberg.org/tesselle/folio☆14Dec 15, 2025Updated 7 months ago
- Radiocarbon calibration command line tool and Haskell module☆11Jun 11, 2026Updated last month
- A birth-death-hybridization based phylogenetic network simulator.☆11Oct 2, 2024Updated last year
- Phylogenetic penalized likelihood☆57Jun 27, 2025Updated last year
- A book for teaching people how to do comparative methods in R☆22Jul 28, 2023Updated 2 years ago
- A directory of scripts that utilize the Paleobiology Database☆16Sep 4, 2019Updated 6 years ago
- EarthLife Consortium API☆13Nov 29, 2021Updated 4 years ago
- An R package that facilitates highly customizable and reproducible visualizations of data over geological time intervals☆107Jul 14, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R package to derive outline shapes from (multiple) artefacts on JPEG images.☆16Nov 14, 2021Updated 4 years ago
- Bayesian Evolutionary Analysis by Sampling Trees☆278Jul 13, 2026Updated last week
- Fossil calibrations database☆16Sep 18, 2018Updated 7 years ago
- Datasets from studies of cultural evolution in Archaeology☆16Jun 16, 2022Updated 4 years ago
- A program for multimodel inference on speciation and trait evolution☆35Sep 4, 2017Updated 8 years ago
- Data and R scripts for the manuscript 'A Bayesian approach for fitting and comparing demographic growth models of radiocarbon dates: a c…☆11Feb 15, 2022Updated 4 years ago
- Bayesian tools for reconstructing past demography☆15May 27, 2024Updated 2 years ago