cielavenir / 7bgzfLinks
bgzf/ciso/daxcr/dictzip/gzinga/migz/razf frontends using zlib/zlib-ng/7-zip/zopfli/libdeflate/miniz/libslz/igzip/cryptopp/kzip backends with parallel (de)compression. compilable with gcc/clang/icc/open64.
☆11Updated 4 months ago
Alternatives and similar repositories for 7bgzf
Users that are interested in 7bgzf are comparing it to the libraries listed below
Sorting:
- libstrbuf: A powerful string library for C☆17Updated 8 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Updated 5 years ago
- Five implementations of double linked lists to demonstrate generic data structures in C☆16Updated 5 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆12Updated 6 years ago
- The esa-matchfinder is a C99 library for efficient Lempel-Ziv factorization using enhanced suffix array (ESA).☆23Updated 2 months ago
- Hail: extract lines from a file, a la `head -n x | tail -n y`☆9Updated 4 years ago
- Progress indicator library written in C.☆10Updated 7 months ago
- Algorithms that work on generic C arrays☆11Updated 8 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Updated 3 years ago
- Parallel Block GZIP☆50Updated 8 years ago
- SIMD-accelerated UTF-8 to UTF-32 conversion☆11Updated 6 years ago
- MEM mapper prototype☆13Updated 4 years ago
- A command line program for large scale buffering between piped programs☆15Updated 3 years ago
- Bit packed vector of integral values☆27Updated 4 months ago
- Generic hash table library in C☆31Updated last month
- simple and efficient hashtable implementation for C, taken from musl's hsearch()☆21Updated 2 years ago
- Probabilistic inference of somatic copy number alterations using repeat DNA (FAST-SeqS)☆9Updated 6 years ago
- AVX512 population count routines☆22Updated 5 years ago
- Low memory multithreaded hash table☆24Updated 10 years ago
- A bridge for libzstd-seek to python. Based on mxmlnkn/indexed_bzip2☆24Updated last year
- BWT tunneling☆13Updated 7 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Custom compression for CRAM and others.☆33Updated last month
- modified from gitlab.com/manzai/Big-BWT to support fasta files☆9Updated 4 months ago
- ☆18Updated 10 years ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- semi-reference-based short read compression☆11Updated 6 years ago
- The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.☆18Updated 3 years ago
- Fast parallel random access to bzip2 and gzip files in Python☆79Updated 2 weeks ago
- elPrep reimplementations in C++ and Java, only for benchmark comparisons☆10Updated 2 years ago