A pipeline framework for python
☆112Sep 19, 2026Updated last week
Alternatives and similar repositories for pipen
Users that are interested in pipen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A set of processes/pipelines for bioinformatics☆15Sep 19, 2026Updated last week
- A framework for data piping in python☆37May 4, 2026Updated 4 months ago
- A cheat sheet for Bioinformatians.☆11Aug 9, 2017Updated 9 years ago
- A lightweight database framework for python☆15Nov 11, 2022Updated 3 years ago
- A port of liquid template engine for python☆60Aug 10, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A pipeline abstraction for Python☆168Feb 24, 2021Updated 5 years ago
- WES HLA Typing based on multiple alternative tools☆18Mar 8, 2021Updated 5 years ago
- Python library for simple and complex indels.☆13Jan 22, 2024Updated 2 years ago
- ☆20Jan 12, 2017Updated 9 years ago
- Beginning of a textbook for shell skills for bioinformatics☆11Oct 7, 2025Updated 11 months ago
- A novel pipeline framework to accelerate bioinformatics analysis☆31Updated this week
- ☆22Nov 11, 2024Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Oct 23, 2023Updated 2 years ago
- Modernized flask api builder with validator and openapi.☆16Mar 20, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆16Jun 29, 2026Updated 2 months ago
- ☆16Aug 10, 2026Updated last month
- A Grammar of Data Manipulation in python☆289Sep 2, 2026Updated 3 weeks ago
- Kamaelia is a toolset that had the aim of making working with concurrency simple and reusable. It is now retired in favour of Guild. (Thi…☆15Aug 17, 2025Updated last year
- Quickly get coverage statistics given reads and an assembly☆17May 13, 2024Updated 2 years ago
- A fork of http://pydispatcher.sourceforge.net/ with PyPy support☆16Jul 3, 2017Updated 9 years ago
- asyncio executors, clean and simple.☆10Nov 25, 2023Updated 2 years ago
- An R package to write logs.☆15Aug 6, 2026Updated last month
- Launch a distributed R server on a cluster from a remote R session☆12Apr 23, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Simply package URL based on Tauri☆11Jan 4, 2025Updated last year
- A lightweight and powerful Julia package for computational pipelines and workflows.☆55Jun 4, 2026Updated 3 months ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- ☆15Sep 21, 2021Updated 5 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆17Dec 10, 2019Updated 6 years ago
- ggplot2 extension to add a table to an axis.☆13May 29, 2021Updated 5 years ago
- Calling R from Go and a better cli for the R console (WIP, nothing is working now)☆14Aug 19, 2020Updated 6 years ago
- A workflow assembler for cancer genome analytics and informatics☆19Nov 16, 2016Updated 9 years ago
- 3D geoms for plotnine (grammar of graphics in Python)☆13Aug 5, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A style for equals assignment, based on the styler package☆13Apr 30, 2024Updated 2 years ago
- R package to query, list, manipulate system processes☆83Apr 30, 2026Updated 4 months ago
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 5 months ago
- Read Non-Rectangular Text Data☆32Nov 17, 2025Updated 10 months ago
- Graphical Display For Data Frame Output☆17Apr 9, 2025Updated last year
- next gen ADAP☆12Jan 28, 2020Updated 6 years ago
- Client-side REST access to KEGG☆15Jul 22, 2026Updated 2 months ago