A pipeline framework for python
☆109May 7, 2026Updated this week
Alternatives and similar repositories for pipen
Users that are interested in pipen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A set of processes/pipelines for bioinformatics☆15Apr 29, 2026Updated last week
- A framework for data piping in python☆37Apr 30, 2026Updated last week
- A cheat sheet for Bioinformatians.☆11Aug 9, 2017Updated 8 years ago
- A lightweight database framework for python☆15Nov 11, 2022Updated 3 years ago
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution☆14May 4, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Simple python workflow engine based on asyncio and a DAG structure.☆63May 11, 2017Updated 8 years ago
- WES HLA Typing based on multiple alternative tools☆18Mar 8, 2021Updated 5 years ago
- A pipeline abstraction for Python☆168Feb 24, 2021Updated 5 years ago
- ☆20Jan 12, 2017Updated 9 years ago
- Python library for simple and complex indels.☆12Jan 22, 2024Updated 2 years ago
- Easy ETL☆17Aug 12, 2022Updated 3 years ago
- Generalized Reporter Score-based Functional Enrichment Method for Omics Data☆88Apr 28, 2026Updated last week
- Quickly get coverage statistics given reads and an assembly☆16May 13, 2024Updated last year
- Beginning of a textbook for shell skills for bioinformatics☆11Oct 7, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PopSTR - A Population based microsatellite genotyper☆32Oct 23, 2023Updated 2 years ago
- Prism themes for plotnine, inspired by ggprism.☆17Aug 13, 2025Updated 8 months ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆14Apr 27, 2026Updated last week
- Kamaelia is a toolset that had the aim of making working with concurrency simple and reusable. It is now retired in favour of Guild. (Thi…☆15Aug 17, 2025Updated 8 months ago
- a simple lightweight workflow engine for data analysis scripting☆11Sep 5, 2019Updated 6 years ago
- asyncio executors, clean and simple.☆10Nov 25, 2023Updated 2 years ago
- An R package to write logs.☆15Mar 6, 2026Updated 2 months ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Feb 17, 2021Updated 5 years ago
- Launch a distributed R server on a cluster from a remote R session☆12Apr 23, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Simply package URL based on Tauri☆12Jan 4, 2025Updated last year
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Dec 10, 2019Updated 6 years ago
- ☆16Sep 21, 2021Updated 4 years ago
- 3D geoms for plotnine (grammar of graphics in Python)☆13Aug 5, 2022Updated 3 years ago
- ggplot2 extension to add a table to an axis.☆13May 29, 2021Updated 4 years ago
- A workflow assembler for cancer genome analytics and informatics☆19Nov 16, 2016Updated 9 years ago
- A novel pipeline framework to accelerate bioinformatics analysis☆31Oct 5, 2025Updated 7 months ago
- ☆16Oct 10, 2023Updated 2 years ago
- R package to query, list, manipulate system processes☆83Apr 30, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Read Non-Rectangular Text Data☆32Nov 17, 2025Updated 5 months ago
- A style for equals assignment, based on the styler package☆13Apr 30, 2024Updated 2 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- Dual listbox for Dash. Original component: https://rawgit.com/jyotirmaybanerjee/react-duallist/master/example/examples.html#☆12Aug 31, 2024Updated last year
- Enable regular expression searching of selectize object options in the R Shiny package☆19Sep 26, 2017Updated 8 years ago
- Powerful statistics for VCF files☆73Nov 16, 2025Updated 5 months ago
- Client-side REST access to KEGG☆15Apr 29, 2026Updated last week