A pipeline framework for python
☆111Aug 31, 2026Updated last week
Alternatives and similar repositories for pipen
Users that are interested in pipen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A set of processes/pipelines for bioinformatics☆15Updated this week
- A cheat sheet for Bioinformatians.☆11Aug 9, 2017Updated 9 years ago
- An R package for caching function outputs in memory (memoization)☆13Dec 9, 2025Updated 8 months ago
- A port of liquid template engine for python☆60Aug 10, 2026Updated 3 weeks ago
- Simple tokenised template system for SGE☆10Mar 1, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution☆14May 4, 2022Updated 4 years ago
- WES HLA Typing based on multiple alternative tools☆18Mar 8, 2021Updated 5 years ago
- Python library for simple and complex indels.☆13Jan 22, 2024Updated 2 years ago
- ☆20Jan 12, 2017Updated 9 years ago
- Generalized Reporter Score-based Functional Enrichment Method for Omics Data☆88Apr 28, 2026Updated 4 months ago
- Easy ETL☆17Aug 12, 2022Updated 4 years ago
- Workflow: Convert CONTROL-freec output to GISTIC2☆10Apr 20, 2021Updated 5 years ago
- Beginning of a textbook for shell skills for bioinformatics☆11Oct 7, 2025Updated 11 months ago
- A novel pipeline framework to accelerate bioinformatics analysis☆31Oct 5, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆22Nov 11, 2024Updated last year
- Prism themes for plotnine, inspired by ggprism.☆18Aug 13, 2025Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Oct 23, 2023Updated 2 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Feb 17, 2021Updated 5 years ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆15Jun 29, 2026Updated 2 months ago
- a simple lightweight workflow engine for data analysis scripting☆11Sep 5, 2019Updated 7 years ago
- ☆16Aug 10, 2026Updated 3 weeks ago
- A Grammar of Data Manipulation in python☆289Updated this week
- Kamaelia is a toolset that had the aim of making working with concurrency simple and reusable. It is now retired in favour of Guild. (Thi…☆15Aug 17, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Quickly get coverage statistics given reads and an assembly☆17May 13, 2024Updated 2 years ago
- An R package to write logs.☆15Aug 6, 2026Updated last month
- Launch a distributed R server on a cluster from a remote R session☆12Apr 23, 2022Updated 4 years ago
- Simply package URL based on Tauri☆11Jan 4, 2025Updated last year
- A lightweight and powerful Julia package for computational pipelines and workflows.☆55Jun 4, 2026Updated 3 months ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- An easy to use Julia framework for agent based modeling.☆13Dec 22, 2023Updated 2 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆17Dec 10, 2019Updated 6 years ago
- ggplot2 extension to add a table to an axis.☆13May 29, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Calling R from Go and a better cli for the R console (WIP, nothing is working now)☆13Aug 19, 2020Updated 6 years ago
- A workflow assembler for cancer genome analytics and informatics☆19Nov 16, 2016Updated 9 years ago
- A style for equals assignment, based on the styler package☆13Apr 30, 2024Updated 2 years ago
- R package to query, list, manipulate system processes☆83Apr 30, 2026Updated 4 months ago
- Powerful statistics for VCF files☆74Nov 16, 2025Updated 9 months ago
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated 4 months ago
- Read Non-Rectangular Text Data☆32Nov 17, 2025Updated 9 months ago