Ramachandran plotting tool
☆22Jul 21, 2026Updated 2 months ago
Alternatives and similar repositories for ramachandraw
Users that are interested in ramachandraw are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 4 years ago
- Python implementation of the Ramachandran plot☆57Jul 20, 2025Updated last year
- Scripts for calculating RESP charges with Gaussian, starting only with .xyz file of your compound. Generate .mol2, .frcmod and .pdb with …☆10Mar 26, 2019Updated 7 years ago
- protein docking using a density-based descriptor for atoms charge and dynamics☆14Nov 17, 2022Updated 3 years ago
- localCIDER - sequence analysis tool for disordered protein sequences☆26May 15, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆15Jun 26, 2018Updated 8 years ago
- Robust and stable clustering of molecular dynamics simulation trajectories.☆20Sep 2, 2022Updated 4 years ago
- BioMetAll is a command line application to allow the identification of metal-binding sites in proteins from backbone preorganization.☆13Jun 9, 2026Updated 4 months ago
- Design platform for creating single-chain polyhedral cages made from coiled-coil building modules☆25Oct 12, 2017Updated 9 years ago
- Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆23Mar 13, 2018Updated 8 years ago
- Some of useful tcl scripts to analyse data from VMD☆16Aug 2, 2022Updated 4 years ago
- PARENT: a parallel software suite for the calculation of configurational entropy in biomolecular systems☆16Jan 20, 2022Updated 4 years ago
- A VMD script to calculate side-chain and backbone dihedrals (torsion angles)☆14Jun 4, 2016Updated 10 years ago
- A Python package for mapping sequence aligned data onto protein structures☆37May 26, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Feb 11, 2021Updated 5 years ago
- Main repository for METAGUI3☆22Jun 19, 2021Updated 5 years ago
- C++ Accelerated Python Diffusion Maps Library☆24Aug 28, 2018Updated 8 years ago
- Various tutorials about MD setup and analysis, protein-ligand docking, machine learning and lots of other interesting things.☆35Jan 2, 2021Updated 5 years ago
- The present study is finalised to determine the most advanced models in the literature capable of producing new high-quality molecules st…☆10Aug 31, 2021Updated 5 years ago
- A Python 3 script for cleaning up the PDB file☆11Dec 20, 2017Updated 8 years ago
- ☆11Apr 21, 2023Updated 3 years ago
- ☆12Apr 21, 2026Updated 5 months ago
- ☆35Aug 28, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Profiler for metagenomics based on NGLess☆14Feb 22, 2024Updated 2 years ago
- ☆14May 3, 2022Updated 4 years ago
- Python Tools for NAMD☆25May 7, 2025Updated last year
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jul 6, 2026Updated 3 months ago
- A toolkit to bulk-submission, download, analysis and summarizing data from abYsis.org☆10Apr 20, 2020Updated 6 years ago
- Alignment-free 3D molecular shape descriptors based on spectral and diffusion geometry. Provides tools for computing Laplace-Beltrami spe…☆12Jan 21, 2019Updated 7 years ago
- Brain and body detectors for fetal MRI developed during my PhD☆11Sep 8, 2020Updated 6 years ago
- ☆11Jan 2, 2021Updated 5 years ago
- Geometric super-resolution for molecular geometries☆43Jun 15, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- a tool for annotation of immunoglobulin genes in genome assemblies☆15Sep 22, 2025Updated last year
- Percentile-normalization method for correcting batch effects in case-control studies☆12Oct 26, 2019Updated 6 years ago
- TikZExtensions☆26Aug 3, 2026Updated 2 months ago
- pyKVFinder: Python-C parallel KVFinder☆40Sep 28, 2026Updated 2 weeks ago
- Protein and nucleic acid validation service☆108Sep 22, 2026Updated 3 weeks ago
- Display Bioinformatics PhD programs in the US☆10Mar 11, 2019Updated 7 years ago
- ☆15Jun 23, 2026Updated 3 months ago