☆58Mar 14, 2023Updated 2 years ago
Alternatives and similar repositories for DeepPROTACs
Users that are interested in DeepPROTACs are comparing it to the libraries listed below
Sorting:
- ☆65Oct 11, 2022Updated 3 years ago
- Integrative modeling of PROTAC-mediated ternary complex☆29May 4, 2022Updated 3 years ago
- Fragment Linker Prediction Using Deep Encoder-Decoder Network for PROTAC Drug Design☆12Oct 2, 2023Updated 2 years ago
- ☆18Jul 14, 2024Updated last year
- ☆19Jul 14, 2022Updated 3 years ago
- Predicting PROTAC protein degradation activity via machine learning.☆15Sep 17, 2025Updated 5 months ago
- A deep learning framework for accurate reaction prediction and its application on high-throughput experimentation data☆17Aug 8, 2023Updated 2 years ago
- Input files and binding free energy values from our benchmark with QuantumBind-RBFE☆16Apr 16, 2025Updated 10 months ago
- A toolkit developed to predict and analyze PROTAC-mediated ternary complexes using AlphaFold3 and Boltz-1.☆40Jul 17, 2025Updated 7 months ago
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆27Aug 12, 2021Updated 4 years ago
- UROP Project @ Coley Group☆27Jan 22, 2023Updated 3 years ago
- ☆13Dec 5, 2024Updated last year
- Interpretable PROTAC degradation prediction with structure-informed deep ternary attention framework☆12Oct 6, 2025Updated 4 months ago
- PROTACable is an end-to-end in-silico design toolkit for novel PROTACs☆29Jun 3, 2024Updated last year
- ☆13Jun 7, 2024Updated last year
- Automatic Fragment Linking with Deep Conditional Transformer Neural Networks☆55Feb 27, 2022Updated 4 years ago
- A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design☆21Feb 11, 2025Updated last year
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆73Mar 27, 2025Updated 11 months ago
- Build conformational representations of Intrinsically Disordered Proteins and Regions by a guided sampling of the protein torsion space☆31Dec 18, 2025Updated 2 months ago
- ☆11Oct 1, 2021Updated 4 years ago
- Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres☆16Oct 2, 2024Updated last year
- ☆17Sep 30, 2025Updated 5 months ago
- GenUI frontend application. It provides a GUI to the GenUI REST API web services.☆22Sep 4, 2023Updated 2 years ago
- ☆26May 14, 2025Updated 9 months ago
- The official open-source repository for AutoMolDesigner, an easy-to-use Python application dedicated to automated molecular design.☆30Apr 26, 2024Updated last year
- MEGADOCK on Google Colaboratory☆20Oct 2, 2023Updated 2 years ago
- ☆10Oct 31, 2025Updated 4 months ago
- App for serotonergic targets☆12Jan 8, 2026Updated last month
- ☆16Dec 24, 2016Updated 9 years ago
- ☆29May 5, 2025Updated 9 months ago
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆11Jun 13, 2022Updated 3 years ago
- Tutorials on doing AMBER based Metadynamics and Gaussian Accelerated MD (GaMD)☆11Dec 1, 2025Updated 3 months ago
- ☆12Jul 5, 2024Updated last year
- ☆13Jun 23, 2025Updated 8 months ago
- ☆34Feb 28, 2022Updated 4 years ago
- ☆42Nov 29, 2025Updated 3 months ago
- ☆13Jul 24, 2024Updated last year
- mirror of https://zhanglab.ccmb.med.umich.edu/EDTSurf/☆10Jun 20, 2023Updated 2 years ago
- DyNoPy☆11Sep 5, 2024Updated last year