neuropoly / totalspineseg
Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.
☆17Updated this week
Related projects ⓘ
Alternatives and complementary repositories for totalspineseg
- A comprehensive list of papers on learning-based image registration, as well as python implementation of various loss functions and evalu…☆31Updated this week
- A Foundational Keypoint Model for Robust and Flexible Brain MRI Registration☆30Updated 3 months ago
- Baseline methods, training scripts, and pretrained models for LUMIR challenge at Learn2Reg 2024☆22Updated last month
- ☆33Updated 3 months ago
- COSTA: A Multi-center Multi-vendor TOF-MRA Dataset and A Novel Cerebrovascular Segmentation Network☆20Updated 2 months ago
- Medical image registration, affine and deformable registration☆26Updated 3 weeks ago
- ☆46Updated this week
- Neural Pre Processing is an end-to-end weakly supervised learning approach for converting raw head MRI images to intensity-normalized, sk…☆26Updated 9 months ago
- MONAIViz - 3D Slicer Extension☆22Updated 4 months ago
- ☆50Updated 9 months ago
- A 3D Slicer extension for FastSAM3D☆14Updated 2 months ago
- The labels for the open-source dataset used in the paper "Topology-Preserving Automatic Labeling of Coronary Arteries via Anatomy-aware C…☆3Updated last month
- ☆34Updated last year
- Config-based framework for organized and reproducible deep learning. MONAI Bundle + PyTorch Lightning.☆22Updated 3 weeks ago
- ☆30Updated 3 years ago
- The official website for uniGradICON: A Foundation Model for Medical Image Registration☆82Updated 2 weeks ago
- Lung250M-4B: A Combined 3D Dataset for CT- and Point Cloud-Based Intra-Patient Lung Registration☆29Updated 9 months ago
- This is the official Pytorch implementation of "Unsupervised Deformable Image Registration with Absent Correspondences in Pre-operative a…☆37Updated last year
- This is the code for the MICCAI 2021 paper Self-Supervised Vessel Enhancement Using Flow-Based Consistencies.☆26Updated 3 years ago
- ☆18Updated 11 months ago
- Convert the TotalSegmentator dataset into the nnUNet format☆14Updated last year
- This repository contains code used to prepare the LUMIERE Glioblastoma dataset.☆18Updated 8 months ago
- ☆31Updated last year
- High Fidelity Medical Image-to-Image Translation with Spatial-Intensity Transforms☆19Updated 2 years ago
- X-ray2CTPA: Generating 3D CTPA scans from 2D X-ray conditioning☆16Updated 3 months ago
- This repository contains the code used for the paper "Towards automated brain aneurysm detection in TOF-MRA: open data, weak labels, and …☆29Updated last year
- Code associated with the paper Cascaded Multitask U-Net using topological loss for vessel segmentation and centerline extraction☆16Updated 3 months ago
- ☆24Updated last year
- Docker for running stroke lesion core segmentation☆29Updated 3 years ago
- [IEEE-TMI'23] TaG-Net: Topology-aware Graph Network for Centerline-based Vessel Labeling☆37Updated 10 months ago