rachellea / ct-volume-preprocessingLinks
End-to-end Python CT volume preprocessing pipeline to convert raw DICOMs into clean 3D numpy arrays for ML. From paper Draelos et al. "Machine-Learning-Based Multiple Abnormality Prediction with Large-Scale Chest Computed Tomography Volumes."
☆76Updated 5 years ago
Alternatives and similar repositories for ct-volume-preprocessing
Users that are interested in ct-volume-preprocessing are comparing it to the libraries listed below
Sorting:
- Computed tomography to body composition (Comp2Comp).☆106Updated last month
- SegmentAnyBone: A Universal Model that Segments Any Bone at Any Location on MRI☆116Updated last year
- TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.☆32Updated last year
- This Repo Will contain the Preprocessing Code for 3D Medical Imaging☆215Updated 5 years ago
- Precision medicine toolbox☆69Updated last year
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.☆89Updated 3 years ago
- Airway segmentation from chest CTs using deep Convolutional Neural Networks☆71Updated last year
- DICOM RT-Struct to mask☆103Updated last year
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.☆99Updated 4 months ago
- A package to compute medical segmentation metrics.☆182Updated last year
- 💥 Command line tool for automatic liver parenchyma and liver vessel segmentation in CT using a pretrained deep learning model☆73Updated last year
- ☆128Updated 4 months ago
- Medical Image Radiomics Processor☆76Updated last week
- Segmentation deep learning ALgorithm based on MONai toolbox: single and multi-label segmentation software developed by QIMP team-Vienna.☆124Updated 4 years ago
- A foundation model for universal 3D blood vessel segmentation. Paper accepted @ CVPR25.☆144Updated 2 months ago
- A Large-Scale Dataset for Spinal Vertebrae Segmentation in Computed Tomography☆189Updated 8 months ago
- new and more efficient version for 3D discrete deformable registration, reaching the highest accuracy in several benchmarks☆125Updated 5 months ago
- The official repository of "AbdomenCT-1K: Is Abdominal Organ Segmentation A Solved Problem?"☆262Updated 2 years ago
- Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hiera…☆81Updated 2 weeks ago
- MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemi…☆306Updated 3 weeks ago
- BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Comp…☆59Updated 3 months ago
- This is a 3D Slicer extension for segmentation and spatial reconstruction of infiltrated, collapsed, and emphysematous areas in lung CT.☆87Updated last year
- ☆146Updated last month
- This repository employs a deep-learning method for the automated segmentation of total metabolic tumor volume (TMTV) in whole-body [18]F-…☆23Updated 11 months ago
- The official repository of the 2023 Kidney Tumor Segmentation Challenge (KiTS23)☆133Updated 5 months ago
- Extension for 3D Slicer for running MONAI Auto3DSeg models☆112Updated 3 months ago
- ☆37Updated last year
- A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.☆252Updated 6 months ago
- Everything about the 'Large Scale Vertebrae Segmentation Challenge' @ MICCAI 2019-2020☆255Updated 4 years ago
- Automatic classification of tertiary bronchi based on bronchus masks using a rule-based approach.☆45Updated 3 years ago