rachellea / ct-volume-preprocessingLinks
End-to-end Python CT volume preprocessing pipeline to convert raw DICOMs into clean 3D numpy arrays for ML. From paper Draelos et al. "Machine-Learning-Based Multiple Abnormality Prediction with Large-Scale Chest Computed Tomography Volumes."
☆72Updated 4 years ago
Alternatives and similar repositories for ct-volume-preprocessing
Users that are interested in ct-volume-preprocessing are comparing it to the libraries listed below
Sorting:
- DICOM RT-Struct to mask☆101Updated last year
- This Repo Will contain the Preprocessing Code for 3D Medical Imaging☆208Updated 5 years ago
- Computed tomography to body composition (Comp2Comp).☆92Updated 2 weeks ago
- Segmentation deep learning ALgorithm based on MONai toolbox: single and multi-label segmentation software developed by QIMP team-Vienna.☆123Updated 3 years ago
- TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.☆31Updated last year
- SegmentAnyBone: A Universal Model that Segments Any Bone at Any Location on MRI☆103Updated 8 months ago
- Precision medicine toolbox☆70Updated last year
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.☆86Updated 3 years ago
- A package to compute medical segmentation metrics.☆173Updated last year
- A Large-Scale Dataset for Spinal Vertebrae Segmentation in Computed Tomography☆180Updated 3 months ago
- Airway segmentation from chest CTs using deep Convolutional Neural Networks☆66Updated last year
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.☆91Updated 11 months ago
- A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.☆238Updated last month
- Processing Library and Analysis Toolkit for Medical Imaging in Python☆137Updated 3 months ago
- The official repository of "AbdomenCT-1K: Is Abdominal Organ Segmentation A Solved Problem?"☆253Updated last year
- The official repository of the 2023 Kidney Tumor Segmentation Challenge (KiTS23)☆119Updated 3 weeks ago
- ☆113Updated last week
- MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemi…☆265Updated 3 weeks ago
- Everything about the 'Large Scale Vertebrae Segmentation Challenge' @ MICCAI 2019-2020☆239Updated 4 years ago
- Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hiera…☆81Updated 11 months ago
- Medical Image Radiomics Processor☆70Updated last month
- Annotations for the PI-CAI Challenge: Public Training and Development Dataset☆62Updated 2 months ago
- This is a 3D Slicer extension for segmentation and spatial reconstruction of infiltrated, collapsed, and emphysematous areas in lung CT.☆83Updated 11 months ago
- 💥 Command line tool for automatic liver parenchyma and liver vessel segmentation in CT using a pretrained deep learning model☆69Updated 11 months ago
- Implementation of the DeepVesselNet deep learning network☆151Updated 2 years ago
- NaviAirway: a Bronchiole-sensitive Deep Learning-based Airway Segmentation Pipeline☆54Updated 2 years ago
- ☆33Updated last year
- Develop dose prediction models for knowledge-based planning in radiotherapy☆120Updated 9 months ago
- Model for the detection, segmentation, and classification of prostate lesions from mpMRI, using ProstateX data and Retina U-Net☆69Updated 3 years ago
- ☆87Updated 2 weeks ago