martinmenten / skeletonization-for-gradient-based-optimization
☆41Updated last year
Alternatives and similar repositories for skeletonization-for-gradient-based-optimization:
Users that are interested in skeletonization-for-gradient-based-optimization are comparing it to the libraries listed below
- [MICCAI 2024] Centerline Boundary Dice Loss for Vascular Segmentation☆55Updated last month
- ☆49Updated 6 months ago
- NexToU: Efficient Topology-Aware U-Net for Medical Image Segmentation☆61Updated last week
- The code of our paper 'Deep Closing: Enhancing Topological Connectivity in Medical Tubular Segmentation'☆14Updated 9 months ago
- blob loss example implementation☆37Updated 6 months ago
- [ECCV'22 Oral] PointScatter: Point Set Representation for Tubular Structure Extraction☆42Updated last year
- The PyTorch implementation of the skea-topo aware loss proposed in paper: Enhancing Boundary Segmentation for Topological Accuracy with S…☆12Updated 4 months ago
- [ISBI 2024] An implementation of SAM3D which adapts Segment Anything Model for Volumetric Medical Image Segmentation☆55Updated 8 months ago
- ☆39Updated 5 months ago
- DMT codes for the ICLR 2021 paper: Topology-Aware Segmentation Using Discrete Morse Theory☆44Updated last year
- This repository contains the implementation for our work "Topology-Aware Uncertainty for Image Segmentation", accepted to NeurIPS 2023.☆45Updated 2 weeks ago
- iSegFormer: Interactive Image/Volume Segmentation using Vision Transformers (MICCAI 2022)☆27Updated 7 months ago
- Point-Unet: A Context-aware Point-based Neural Network for Volumetric Segmentation (MICCAI 2021)☆35Updated 3 months ago
- ☆11Updated last year
- Skeleton Recall Loss for Connectivity Conserving and Resource Efficient Segmentation of Thin Tubular Structures☆90Updated 3 months ago
- Topological losses for spatially coherent CNN-based (multi-class) image segmentation in 2D and 3D☆23Updated 2 years ago
- [MICCAI 2022 Best Paper Finalist] Bayesian Pseudo Labels: Expectation Maximization for Robust and Efficient Semi Supervised Segmentation☆39Updated last year
- ☆26Updated last year
- Algorithm submission template for the TopCoW2024 challenge on grand-challnge☆11Updated last week
- Codes for 'Learning Probabilistic Topological Representations Using Discrete Morse Theory'☆14Updated last year
- Deep 3D Vessel Segmentation based on Cross Transformer Network☆18Updated 2 years ago
- MICCAI 2023: FSDiffReg: Feature-wise and Score-wise Diffusion-guided Unsupervised Deformable Image Registration for Cardiac Images☆33Updated last year
- ☆17Updated 7 months ago
- A JAX-based deep learning framework for image segmentation using diffusion models.☆82Updated 8 months ago
- Code for the paper : Do we really need dice? The hidden region-size biases of segmentation losses. MeDIA 2023. https://www.sciencedirect.…☆39Updated last year
- Training and Tuning Strategies for Foundation Models in Medical Imaging☆19Updated 7 months ago
- ☆31Updated 8 months ago
- [ISBI 2024 Oral] ProMISe: Prompt-driven 3D Medical Image Segmentation Using Pretrained Image Foundation Models☆27Updated 6 months ago
- ☆46Updated 10 months ago