Python Vascular Network Analysis
☆26Updated this week
Alternatives and similar repositories for pyvane
Users that are interested in pyvane are comparing it to the libraries listed below
Sorting:
- ☆14May 16, 2024Updated last year
- A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolution☆15Apr 29, 2024Updated last year
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels…☆50Dec 19, 2023Updated 2 years ago
- Package to compute the evaluation metrics for MICCAI TopCoW2024 challenge☆16Sep 24, 2024Updated last year
- A software to edit, model and mesh vascular networks from centerlines.☆31Feb 28, 2024Updated 2 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆53Jun 6, 2024Updated last year
- Optic disk annotations for DRIVE and IOSTAR dataset☆10May 14, 2024Updated last year
- Deep Vessel Segmentation by Learning Graphical Connectivity☆100Oct 15, 2019Updated 6 years ago
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …☆55Nov 16, 2025Updated 3 months ago
- A synthesis pipeline for annotation-free blood vessel segmentation in cerebral 3D OCTA images. Paper accepted @ MICCAI24.☆29Aug 19, 2025Updated 6 months ago
- Code associated with the paper Cascaded Multitask U-Net using topological loss for vessel segmentation and centerline extraction☆25Jul 22, 2024Updated last year
- Implementation of the DeepVesselNet deep learning network☆156Jul 7, 2023Updated 2 years ago
- Research Paper - Automated Labelling of Coronary Vessels via Neural Network☆10Oct 12, 2020Updated 5 years ago
- VascuSynth: Vascular Tree Synthesis Software☆11Nov 23, 2022Updated 3 years ago
- Provides current Voreen Sources (with modifications) by Uni Münster to build voreen for PC, server or lrz cluster, including workspaces a…☆12Mar 2, 2024Updated last year
- ☆10Jun 2, 2023Updated 2 years ago
- [IEEE-TMI'23] TaG-Net: Topology-aware Graph Network for Centerline-based Vessel Labeling☆43Jan 9, 2024Updated 2 years ago
- ☆15May 8, 2025Updated 9 months ago
- Vascular Tree Synthesis Software. You will need CMake and ITK to run VascuSynth. Read the paper in the Insight Journal for instructions…☆12Jan 24, 2018Updated 8 years ago
- Segmentation of blood vessel from CTA scan using bone subtraction and an iterative thresholding seeking algorithm☆12Apr 9, 2021Updated 4 years ago
- ☆14Jul 8, 2023Updated 2 years ago
- Code for "3D Arterial Segmentation via Single 2D Projections and Depth Supervision in Contrast-Enhanced CT Images" @ MICCAI 2023☆14Jan 24, 2025Updated last year
- ☆12Nov 16, 2020Updated 5 years ago
- A pipeline to extract vessels from MR images and perform analysis. Code to my TPAMI paper "Tracking the adaptation and compensation proce…☆29Jan 11, 2022Updated 4 years ago
- Python Vasculature Biomarker toolbox API☆16Jan 1, 2026Updated 2 months ago
- Init with augmentation loss☆19Feb 7, 2023Updated 3 years ago
- Code and dataset for the MICCAI 2020 paper: Automated Intracranial Artery Labeling using a Graph Neural Network and Hierarchical Refineme…☆29Aug 6, 2022Updated 3 years ago
- ☆15Jul 14, 2021Updated 4 years ago
- This package contains multiple 3D OCT denoising methods, including our proposed mixed multiscale BM4D (mmBM4D), which is one of the faste…☆20Jun 14, 2024Updated last year
- [ECCV'24] cDP-MIL: Robust Multiple Instance Learning via Cascaded Dirichlet Process☆17Sep 10, 2024Updated last year
- FreeCOS: Self-Supervised Learning from Fractals and Unlabeled Images for Curvilinear Object Segmentation (ICCV2023)☆41Sep 7, 2023Updated 2 years ago
- An interactive software to extract vessel centerline☆66May 28, 2021Updated 4 years ago
- 透過 3D Unet 將心臟的冠狀動脈(包含 左冠狀動脈、有冠狀動脈、左迴旋支、左前降支、右後降支等) 分割出來，其他的後續應用及其研究是秘密歐。 Dataset 來自聯新醫院，並自己 Label 製作而成。☆37Sep 26, 2021Updated 4 years ago
- Repository for the paper "Synthetic optical coherence tomography angiographs for detailed retinal vessel segmentation without human annot…☆48Aug 11, 2025Updated 6 months ago
- The code is soon coming.☆18Jul 24, 2025Updated 7 months ago
- ☆17Jan 6, 2020Updated 6 years ago
- CLI module for airway segmentation starting from chest CT images☆19Jan 2, 2020Updated 6 years ago
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space☆50Jul 19, 2022Updated 3 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆76Aug 23, 2021Updated 4 years ago