vzachari / IronSmithQSM
Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM based iron concentrations from subcortical and cortical brain regions and evaluating the quality of QSM data using SNR measures and assessment of outlier regions on phase images.
☆18Updated 11 months ago
Related projects ⓘ
Alternatives and complementary repositories for IronSmithQSM
- ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…☆45Updated this week
- Peak width of Skeletonized Mean Diffusivity (PSMD)☆10Updated 6 months ago
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆61Updated this week
- An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images☆44Updated 3 months ago
- Scripts to prepare MP2RAGE for Freesurfer☆23Updated last year
- WM tract atlases for the human (HCP and UK Biobank) and Macaque brain and connectivity blueprint atlases for the human (HCP) and macaque …☆13Updated 2 years ago
- List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data☆60Updated last year
- niimath - a clone of fslmaths. Try the live demo:☆55Updated 2 months ago
- Single Shell Free Water Elimination Model for Diffusion Tensor Imaging☆22Updated 10 months ago
- MP2RAGE Scripts - T1 map correction & Background noise removal☆51Updated last year
- ☆32Updated 2 years ago
- Weakly supervised perivascular spaces segmentation with salient guidance of Frangi filter☆10Updated last year
- REACT: Receptor-Enriched Analysis of functional Connectivity by Targets☆14Updated last year
- R package to implement longitudinal ComBat: A method for harmonizing multi-batch longitudinal data☆29Updated 2 years ago
- Reproduce the artice Hoy et al. 2014 Optimization of a free water elimination two-compartment model for diffusion tensor imaging. Neuroim…☆12Updated 5 years ago
- Bash script to compute DTI-ALPS☆37Updated 3 weeks ago
- Segmentation of Choroid Plexus using Gaussian Mixture Model☆13Updated 2 years ago
- Toolbox for parameter estimation of the Standard Model of diffusion in white matter☆20Updated 4 months ago
- ☆24Updated 6 months ago
- perivascular space segmentation☆13Updated 2 years ago
- A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://ww…☆23Updated 2 months ago
- Dynamic Contrast Enhanced (DCE) MRI Analysis Software☆48Updated 5 months ago
- ☆12Updated 2 weeks ago
- Preprocessing of arterial spin labeling (ASL) data☆40Updated this week
- Automated white matter lesion segmentation☆9Updated 7 years ago
- PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side files like .e.g excel sh…☆26Updated last week
- This repository contains a Python implementation of Morphometric INverse Divergence (MIND) calculation for the estimation of structural s…☆25Updated 7 months ago
- Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps☆60Updated 4 months ago
- Subtype and Stage Inference [Young+, Nature Communications 2018]☆11Updated 3 years ago
- Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries☆35Updated 2 years ago