Automated RNA-seq downstream analysis framework for differential expression, visualization, GO enrichment, and HTML reporting in R.
☆47May 10, 2026Updated 3 months ago
Alternatives and similar repositories for DEGify
Users that are interested in DEGify are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- B-cell Hybrid Immune Variant Engine☆12Jun 26, 2026Updated last month
- ☆34Jul 20, 2018Updated 8 years ago
- ☆27Jan 29, 2026Updated 6 months ago
- The Bioinformatician’s Interactive Lab Notebook (BILN) is a smart, dynamic system for tracking experiments, datasets, and workflows. Desi…☆57Aug 9, 2026Updated 2 weeks ago
- A modest re-desing update for the classic FastQC report.☆30Sep 2, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast protein backbone flexibility prediction model☆36Jan 4, 2026Updated 7 months ago
- Shiny app to easily create publishable plots for scientific papers☆42Aug 9, 2025Updated last year
- RNA-seq Analysis Pipeline Testing and Optimization Resource - Intelligent pipeline selection and comprehensive benchmarking.☆20Apr 28, 2026Updated 3 months ago
- Implementation of MaSigPro for scRNA-Seq Data☆20Jul 31, 2024Updated 2 years ago
- Example code for calling Panther API services☆13Dec 12, 2023Updated 2 years ago
- This repository offers a streamlined RNA-Seq analysis workflow implemented in R, designed to transform raw sequencing data into meaningfu…☆31Dec 15, 2024Updated last year
- ☆11Jun 23, 2017Updated 9 years ago
- An R package for analyzing high-dimensional cytometry data using the tidyverse.☆20Aug 25, 2024Updated last year
- QTL analysis software for high-dimensional data and complex cross designs☆11Jul 22, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆19May 25, 2026Updated 2 months ago
- Multimodal foundation model predicting transcriptome-wide virtual spatial transcriptomics from histology.☆38Aug 12, 2026Updated last week
- Antimicrobial Resistance Analysis☆10Jun 11, 2024Updated 2 years ago
- Take command of your set enrichment analyses.☆23Updated this week
- ☆63Jul 4, 2024Updated 2 years ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 6 years ago
- This is a repository containing a ready-to-use environment for singularity in arm64 (Apple M1).☆18Feb 4, 2022Updated 4 years ago
- A template for a dockerized R development environment for VScode☆22Jan 11, 2026Updated 7 months ago
- An automated workflow to create disease-specific Knowledge Graphs☆25Mar 24, 2026Updated 5 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆32Dec 29, 2023Updated 2 years ago
- Free Parametrization for Small Molecules☆66Jun 30, 2026Updated last month
- A project - tutorial. Differential expression of RNAseq raw counts data using a Real world dataset in R. Packages covered 'DESeq2' and 'E…☆14Nov 18, 2022Updated 3 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆12Mar 10, 2022Updated 4 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- 💠 A streamlined worfklow for Principal Component Analysis of molecular dynamics in PyMOL☆44Jun 13, 2026Updated 2 months ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆23Oct 15, 2024Updated last year
- Compgen Course 2025, Module 3 Course Material, Multi-omics integration using deep learning☆65Jun 3, 2026Updated 2 months ago
- QTL mapping for Diversity Outbred mice (and other multi-founder advanced intercrosses)☆14Apr 3, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Extension of SpatialExperiment with sf☆57May 6, 2026Updated 3 months ago
- Automate seekr handling with seekrflow to decrease time and manual intervention to complete seekr calculations.☆24Aug 11, 2026Updated last week
- AI-powered IDE for bioinformatics — built by biologists, for biologists☆95Aug 13, 2026Updated last week
- This repo is designed as a step-by-step tutorial to teach RNA-seq analysis☆17Dec 21, 2025Updated 8 months ago
- Control PyMOL via Claude Code☆38May 2, 2026Updated 3 months ago
- Tool for drawing gene structures from genome annotation files.☆22Jun 20, 2026Updated 2 months ago
- EBI cancer workshop course materials☆21May 9, 2022Updated 4 years ago