Alternatives and similar repositories for AlphafoldInstallation

Users that are interested in AlphafoldInstallation are comparing it to the libraries listed below

• ai4protein / VenusFactory
  🏭 Easy data acquisition, benchmark resources, PLM fine-tuning for bio-researchers. (ACL Demo 2025)
  ☆165Updated this week
• PKUGaoGroup / DSDP
  Deep Site and Docking Pose (DSDP) is a blind docking strategy accelerated by GPUs, developed by Gao Group. For the site prediction part, …
  ☆63Updated 5 months ago
• ai4protein / Pro-Prime
  ☆74Updated 3 months ago
• carbonsilicon-ai / CarsiDock
  Official repo of "CarsiDock: a deep learning paradigm for accurate protein–ligand docking and screening based on large-scale pre-training…
  ☆102Updated 3 months ago
• CharlesHahn / DuIvyTools
  A Tool to process and visualize the results of molecular dynamics simulations(GROMACS).
  ☆86Updated last month
• bytedance / Protenix-Dock
  An accurate and trainable end-to-end protein-ligand docking framework
  ☆116Updated 8 months ago
• schrojunzhang / KarmaDock
  ☆127Updated last year
• Wang-Lin-boop / CADD-Scripts
  Scripts for virtual screening, cross docking and protein relax using Schrödinegr and Rosetta
  ☆84Updated 7 months ago
• OdinZhang / Delete
  A universal structure-directed lead optimization
  ☆61Updated 8 months ago
• guyujun / FunclibLocal
  Rosetta Funclib
  ☆24Updated 5 years ago
• pengxingang / PocketXMol
  Implementation of PocketXMol, the pocket-interacting molecular generative foundation model.
  ☆92Updated last month
• Valdes-Tresanco-MS / AutoDockTools_py3
  Python3 translation of AutoDockTools
  ☆129Updated last year
• THU-ATOM / DrugCLIP_screen_pipeline
  A hybrid pipeline to screen compounds with DrugCLIP and Schrodinger
  ☆19Updated last year
• sc8668 / RTMScore
  ☆109Updated 2 years ago
• guyujun / pyrosetta-basic
  ☆176Updated 4 years ago
• ComputArtCMCG / PLANET
  ☆70Updated last year
• luancarvalhomartins / PyAutoFEP
  PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods
  ☆200Updated 2 years ago
• lifanchen-simm / transformerCPI2.0
  Sequence-to-drug concept adds a perspective on drug design. It can serve as an alternative method to SBDD, particularly for proteins that…
  ☆77Updated 2 years ago
• ikalvet / heme_binder_diffusion
  ☆141Updated 4 months ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆156Updated 2 weeks ago
• fhh2626 / BFEE2
  binding free energy estimator 2
  ☆132Updated last week
• luwei0917 / DynamicBind
  repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
  ☆271Updated last year
• CAODH / EquiScore
  ☆79Updated last year
• zhanghaicang / carbonmatrix_public
  ☆117Updated 5 months ago
• guaguabujianle / EHIGN_PLA
  ☆21Updated last year
• RosettaCommons / RFdiffusion2
  Inference code for RFdiffusion2
  ☆338Updated 2 weeks ago
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆71Updated last month
• ai4protein / VenusFSFP
  VenusFSFP: Few-Shot Protein Fitness Prediction
  ☆101Updated last week
• yehlincho / BoltzDesign1
  ☆225Updated 3 months ago
• MengwuXiao / GetBox-PyMOL-Plugin
  A PyMOL Plugin for calculating docking box for LeDock, AutoDock and AutoDock Vina.
  ☆112Updated 6 years ago