fhh2626 / BFEE2Links
binding free energy estimator 2
☆135Updated 3 weeks ago
Alternatives and similar repositories for BFEE2
Users that are interested in BFEE2 are comparing it to the libraries listed below
Sorting:
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆80Updated 2 years ago
- ☆40Updated last year
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆164Updated 4 months ago
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆200Updated 2 years ago
- Benchmark set for relative free energy calculations.☆117Updated last year
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆89Updated 5 months ago
- Tutorial on the setup and simulation of a membrane protein with AMBER Lipid21 and PACKMOL-Memgen☆70Updated 2 years ago
- FEP-SPell-ABFE: An Open Source Alchemical Absolute Binding Free Energy Calculation Workflow for Drug Discovery☆78Updated 11 months ago
- Open-source tool to generate 3D-ready small molecules for virtual screening☆73Updated last month
- ☆68Updated 2 years ago
- The public versio☆74Updated 2 years ago
- some scripts for analysis of MD and CADD. And some tutorials.☆61Updated last year
- ☆62Updated 9 months ago
- Open Source, Automated free binding free energy calculation between protein and small molecule. An all-in-one workflow, free energy pertu…☆59Updated 8 months ago
- An automatic workflow to perform MM/GB(PB)SA calculations from force field building, and structure optimization to free energy calculatio…☆123Updated last year
- A Tool to process and visualize the results of molecular dynamics simulations(GROMACS).☆90Updated 2 months ago
- ☆66Updated 2 months ago
- Pipeline converting PDB files to docking-ready PDBQT format☆21Updated 8 months ago
- An Open-Source Molecular Builder and Free Energy Preparation Workflow☆133Updated last month
- Fully automated high-throughput MD pipeline☆86Updated this week
- ☆78Updated 4 years ago
- Interface to OpenMM for easy setup of molecular dynamic simulations of protein-ligand complexes☆157Updated 2 weeks ago
- Simple protein-ligand complex simulation with OpenMM☆91Updated 2 years ago
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆30Updated last month
- ☆77Updated 2 years ago
- Adds or removes hydrogen atoms to achieve the appropriate molecular protonation state for a user-specified pH range☆51Updated last week
- A repository containing the build steps for the ccpbiosim workshop on QM/MM☆68Updated this week
- Deep Site and Docking Pose (DSDP) is a blind docking strategy accelerated by GPUs, developed by Gao Group. For the site prediction part, …☆63Updated 5 months ago
- ☆24Updated 2 years ago
- Tool suite for analysing molecular dynamics trajectories using network analysis and PRS☆52Updated 6 months ago