fhh2626 / BFEE2Links
binding free energy estimator 2
☆132Updated 2 weeks ago
Alternatives and similar repositories for BFEE2
Users that are interested in BFEE2 are comparing it to the libraries listed below
Sorting:
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆79Updated 2 years ago
- Tutorial on the setup and simulation of a membrane protein with AMBER Lipid21 and PACKMOL-Memgen☆69Updated 2 years ago
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆162Updated 3 months ago
- ☆40Updated last year
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆200Updated 2 years ago
- FEP-SPell-ABFE: An Open Source Alchemical Absolute Binding Free Energy Calculation Workflow for Drug Discovery☆77Updated 10 months ago
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆88Updated 4 months ago
- Benchmark set for relative free energy calculations.☆117Updated last year
- ☆68Updated 2 years ago
- Open-source tool to generate 3D-ready small molecules for virtual screening☆69Updated 2 weeks ago
- The public versio☆68Updated 2 years ago
- An automatic workflow to perform MM/GB(PB)SA calculations from force field building, and structure optimization to free energy calculatio…☆123Updated last year
- Interface to OpenMM for easy setup of molecular dynamic simulations of protein-ligand complexes☆156Updated last month
- Free Energy Landscape analysis tool.☆26Updated 9 months ago
- Open Source, Automated free binding free energy calculation between protein and small molecule. An all-in-one workflow, free energy pertu…☆59Updated 7 months ago
- ☆78Updated 4 years ago
- An Open-Source Molecular Builder and Free Energy Preparation Workflow☆133Updated 3 weeks ago
- Simple protein-ligand complex simulation with OpenMM☆91Updated 2 years ago
- ☆60Updated 8 months ago
- A Tool to process and visualize the results of molecular dynamics simulations(GROMACS).☆87Updated last month
- ☆24Updated 2 years ago
- Fully automated high-throughput MD pipeline☆84Updated 3 months ago
- Pipeline converting PDB files to docking-ready PDBQT format☆21Updated 7 months ago
- Adds or removes hydrogen atoms to achieve the appropriate molecular protonation state for a user-specified pH range☆50Updated 3 months ago
- ☆60Updated last month
- some scripts for analysis of MD and CADD. And some tutorials.☆61Updated last year
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆72Updated 2 months ago
- A repository containing the build steps for the ccpbiosim workshop on QM/MM☆68Updated this week
- The graph-convolutional neural network for pka prediction☆91Updated last year
- AI-powered Virtual Screening☆85Updated 2 years ago