CharlesHahn / DuIvyLinks
some scripts for analysis of MD and CADD. And some tutorials.
☆61Updated last year
Alternatives and similar repositories for DuIvy
Users that are interested in DuIvy are comparing it to the libraries listed below
Sorting:
- A Tool to process and visualize the results of molecular dynamics simulations(GROMACS).☆86Updated last month
- binding free energy estimator 2☆132Updated last week
- ☆40Updated last year
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆88Updated 4 months ago
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆29Updated last week
- Tutorial on the setup and simulation of a membrane protein with AMBER Lipid21 and PACKMOL-Memgen☆69Updated 2 years ago
- Deep Site and Docking Pose (DSDP) is a blind docking strategy accelerated by GPUs, developed by Gao Group. For the site prediction part, …☆63Updated 5 months ago
- Easy to get started with molecular dynamics simulation.☆62Updated 5 months ago
- ☆24Updated 2 years ago
- Scripts for virtual screening, cross docking and protein relax using Schrödinegr and Rosetta☆84Updated 7 months ago
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆79Updated 2 years ago
- Trusted force field files for gromacs☆64Updated last year
- FEP-SPell-ABFE: An Open Source Alchemical Absolute Binding Free Energy Calculation Workflow for Drug Discovery☆77Updated 10 months ago
- An automatic workflow to perform MM/GB(PB)SA calculations from force field building, and structure optimization to free energy calculatio…☆123Updated last year
- CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses☆54Updated 3 months ago
- Simple protein-ligand complex simulation with OpenMM☆91Updated 2 years ago
- ☆57Updated last month
- Open Source, Automated free binding free energy calculation between protein and small molecule. An all-in-one workflow, free energy pertu…☆59Updated 7 months ago
- A pocket volume analyzer for use in protein modeling.☆57Updated 3 years ago
- Fully automated high-throughput MD pipeline☆84Updated 2 months ago
- implicit or explicit water model based docking with Autodock vina engine. supporting pharmacophore /position constrained docking☆69Updated 8 months ago
- DockStream: A Docking Wrapper to Enhance De Novo Molecular Design☆125Updated 2 years ago
- ☆68Updated 2 years ago
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆35Updated 4 months ago
- ☆109Updated 2 years ago
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆200Updated 2 years ago
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆72Updated last month
- A repository containing the build steps for the ccpbiosim workshop on QM/MM☆68Updated this week
- Official repo of "CarsiDock: a deep learning paradigm for accurate protein–ligand docking and screening based on large-scale pre-training…☆102Updated 3 months ago
- Package for storage and analysis of virtual screenings run with AutoDock-GPU and AutoDock Vina☆55Updated last month