yiqichenshallwetalk / FEP-on-GPU-WorkflowLinks
☆32Updated 7 months ago
Alternatives and similar repositories for FEP-on-GPU-Workflow
Users that are interested in FEP-on-GPU-Workflow are comparing it to the libraries listed below
Sorting:
- Free Parametrization for Small Molecules☆50Updated 3 months ago
- CReM-dock: generation of chemically reasonable molecules guided by molecular docking☆28Updated last week
- Weighted Ensemble Data Analysis and Plotting☆25Updated last month
- ☆18Updated 4 years ago
- Cloud-based Drug Binding Structure Prediction☆46Updated 2 months ago
- Collection of Python scripts to setup and run simulations with OpenMM☆17Updated 5 years ago
- a pipeline for running MD simulations in the presence of probe molecules for druggability assessment☆12Updated last month
- Computational Chemistry Workflows☆56Updated 3 years ago
- Tools to build coarse grained models and perform simulations with OpenMM☆25Updated 3 years ago
- Cryptic pocket prediction using AlphaFold 2☆24Updated 3 years ago
- ☆29Updated 8 months ago
- A collections of scripts for working molecular dynamics simulations☆45Updated 5 months ago
- Fully automated high-throughput MD pipeline☆86Updated last week
- A tutorials suite for BioSimSpace.☆34Updated 3 months ago
- MSMD (mixed-solvent molecular dynamics) engine and analysis tools☆19Updated 10 months ago
- Fully automated docking pipeline (can be run in distributed environments)☆53Updated last month
- DSDPFlex: Flexible-Receptor Docking with GPU Acceleration☆23Updated last month
- Data set of protein-ligand complexes with reliable experimental structures and affinities☆44Updated 3 months ago
- moldrug (AKA mouse) is a Python package for drug-oriented optimization on the chemical space ☆39Updated 2 months ago
- Simulation-Enabled Estimation of Kinetic Rates - Version 2☆34Updated last month
- Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by …☆28Updated 5 months ago
- Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation te…☆19Updated 3 years ago
- Input files for GROMACS tutorials written for the Journal of Physical Chemistry B☆24Updated last year
- ☆54Updated 8 months ago
- Random Acceleration Molecular Dynamics in GROMACS☆43Updated last year
- Multiscale Simulation Tool for Backmapping☆22Updated 4 months ago
- Python code to run Thermal Titration Molecular Dynamics (TTMD) simulations☆20Updated last year
- Analysis of non-covalent interactions in MD trajectories☆66Updated last year
- ☆27Updated 11 months ago
- This is a SnakeMake based workflow for ABFE calculations that can be easily scaled in a high-throughput manner via Slurm for example.☆60Updated last month