OdinZhang / FragGenLinks
This Code is for Fragment-wise 3D Structure-based Molecular Generation with Reliable Geometry
☆28Updated 6 months ago
Alternatives and similar repositories for FragGen
Users that are interested in FragGen are comparing it to the libraries listed below
Sorting:
- ☆40Updated 6 months ago
- PackDock: a Diffusion Based Side Chain Packing Model for Flexible Protein-Ligand Docking☆34Updated last year
- ☆51Updated 5 months ago
- Knowledge-Guided Diffusion Model for 3D Ligand-Pharmacophore Mapping☆41Updated 3 months ago
- ☆18Updated 7 months ago
- PROTACable is an end-to-end in-silico design toolkit for novel PROTACs☆29Updated last year
- DeepFrag is a deep convolutional neural network that guides ligand optimization by extending a ligand with a molecular fragment, such tha…☆27Updated 3 months ago
- ☆17Updated 4 months ago
- ☆32Updated 2 years ago
- Implementation of DiffDock-Pocket: Diffusion for Pocket-Level Docking with Side Chain Flexibility☆32Updated last year
- ☆16Updated 11 months ago
- ☆27Updated 2 years ago
- ☆30Updated last month
- 3D-MCTS: A general structure-based molecule generation method with MCTS.☆44Updated last year
- Workflow to clean up and fix structural problems in protein-ligand binding datasets☆55Updated 5 months ago
- A toolkit developed to predict and analyze PROTAC-mediated ternary complexes using AlphaFold3 and Boltz-1.☆34Updated 2 months ago
- ☆38Updated 2 years ago
- Code and notebook for our paper "Assessing interaction recovery of predicted protein-ligand poses"☆19Updated last year
- ☆48Updated 6 months ago
- ☆17Updated 2 years ago
- Benchmarking compound activity prediction for real-world drug discovery applications☆14Updated last year
- ☆19Updated 3 years ago
- ☆37Updated last year
- Training and inference code for ShEPhERD: Diffusing shape, electrostatics, and pharmacophores for bioisosteric drug design [ICLR 2025 ora…☆77Updated last month
- Implementation of the Paper "iScore: A ML-Based Scoring Function for de novo Drug Discovery" by S.J. Mahdizadeh, and L.A. Eriksson (https…☆16Updated last year
- ☆19Updated 2 months ago
- ☆58Updated last year
- ☆16Updated 2 years ago
- ☆15Updated 11 months ago
- ☆25Updated last year