FofanovLab / MTSvLinks
Metagenomic Analysis
☆11Updated 4 years ago
Alternatives and similar repositories for MTSv
Users that are interested in MTSv are comparing it to the libraries listed below
Sorting:
- Squeakr: An Exact and Approximate k -mer Counting System☆86Updated 11 months ago
- Smith-Waterman database searches with inter-sequence SIMD parallelisation☆61Updated 2 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 3 years ago
- ☆21Updated 9 months ago
- Find all significant local alignments between reads☆141Updated last year
- A Qiime plugin for MICOM.☆10Updated last month
- just annotate it, dammit!☆93Updated 2 years ago
- LAMBDA – the Local Aligner for Massive Biological DatA☆82Updated last year
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆164Updated 2 months ago
- Sparse Cooccurence Network Investigation for Compositional data☆25Updated last year
- ☆51Updated 3 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆111Updated last year
- Fast multi-line FASTA/Q reader in several programming languages☆176Updated 4 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆179Updated last week
- A robust, extensible metagenomics pipeline☆174Updated this week
- Sample search by metadata and features☆47Updated 2 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆99Updated last month
- Fast and accurate genomic distances using HyperLogLog☆163Updated 3 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆65Updated 6 years ago
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆106Updated 8 years ago
- Antimicrobial Resistance Identification By Assembly☆184Updated 2 years ago
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆94Updated 2 months ago
- ☆135Updated this week
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆110Updated 3 months ago
- Command line utility for manipulating Illumina-generated FASTQ files.☆95Updated this week
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆132Updated 2 years ago
- Rapid and scalable correlation estimation for compositional data☆97Updated last year
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆124Updated 2 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago