ElofssonLab / pcons-fold
Pipeline for protein folding using PconsC and Rosetta
☆18Updated 6 years ago
Related projects: ⓘ
- Automated omics-scale protein modeling and simulation setup.☆52Updated 3 years ago
- Faster, more accurate and entirely open source method for predicting contacts in proteins☆12Updated 6 years ago
- ProFET: Protein Feature Engineering Toolkit for Machine Learning☆56Updated 9 years ago
- Visually explore covariation in protein families☆36Updated 4 years ago
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆21Updated 2 years ago
- ☆11Updated 5 years ago
- Normal Mode Analysis for Macromolecules☆15Updated 7 years ago
- Membrane protein builder and parameterizer☆17Updated 2 weeks ago
- Using Gomacs from IPython notebook☆19Updated 10 years ago
- A novel approach to pose selection in protein-ligand docking based on graph theory.☆19Updated 7 years ago
- Use UCSF Chimera Python API in a standard interpreter☆57Updated 5 years ago
- A Python workflow to study protein-protein coevolution and interaction☆21Updated 7 years ago
- A primer on statistical mechanics for biochemists☆45Updated 2 years ago
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15Updated 6 years ago
- This is a short tutorial showing how to use both VMD and MDAnalysis to analyse a molecular dynamics simulation of a membrane protein.☆21Updated 3 years ago
- Molecular dynamics trajectory analysis in Tensorflow☆36Updated 7 years ago
- Container-based installation of pymol, with interaction through the browser via Jupyter notebook☆18Updated 5 years ago
- Code used in the manuscript for De Novo Design of Bioactive Protein Switches☆15Updated 5 years ago
- A suite of tools to explore protein structures with Protein Blocks☆28Updated 3 years ago
- An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…☆13Updated 6 years ago
- fragbuilder is a tool to create, setup and analyze QM calculations on peptides.☆14Updated 9 years ago
- ☆23Updated this week
- ☆41Updated this week
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆26Updated 4 years ago
- A DDG benchmark capture containing the benchmark dataset and benchmarked protocol captures.☆17Updated 8 years ago
- Keras-based implementation of neural fingerprints, operating on molecular graphs of arbitrary size☆24Updated 7 years ago
- ☆20Updated 4 years ago
- Deep convolutional networks for fold recognition☆22Updated 4 years ago
- The python implementation of the MMTF API, decoder and encoder.☆46Updated 2 years ago
- Universal Transforming Geometric Network for protein structure prediction.☆8Updated 4 years ago