An example project of how to use a U-Net for segmentation on medical images with PyTorch.
☆153Jul 25, 2024Updated last year
Alternatives and similar repositories for basic_unet_example
Users that are interested in basic_unet_example are comparing it to the libraries listed below
Sorting:
- ☆17Feb 3, 2020Updated 6 years ago
- Pre-processing and post-processing for biomedical image analysis☆18Dec 11, 2024Updated last year
- A framework for data augmentation for 2D and 3D image classification and segmentation☆1,172Mar 25, 2025Updated 11 months ago
- Scripts to work with the chaos challenge☆26Mar 4, 2019Updated 6 years ago
- Tensorflow Code for "PHiSeg: Capturing Uncertainty in Medical Image Segmentation", Proc. MICCAI 2019☆129Nov 22, 2022Updated 3 years ago
- ☆13May 10, 2020Updated 5 years ago
- Variant VNet family☆87Dec 28, 2020Updated 5 years ago
- MICCAI2019:3D U$^2$-Net: A 3D Universal U-Net for Multi-Domain Medical Image Segmentation☆239Oct 18, 2023Updated 2 years ago
- We provide DeepMedic and 3D UNet in pytorch for brain tumore segmentation. We also integrate location information with DeepMedic and 3D U…☆161Sep 10, 2018Updated 7 years ago
- Pre-trained model, code, and materials from the paper "Impact of Adversarial Examples on Deep Learning Models for Biomedical Image Segmen…☆60Jul 6, 2020Updated 5 years ago
- ☆77Oct 10, 2018Updated 7 years ago
- This repository implements pytorch version of the modifed 3D U-Net from Fabian Isensee et al. participating in BraTS2017☆222Sep 7, 2018Updated 7 years ago
- residual attention unet for tumor segmentation (liver and brain)☆131Jun 4, 2019Updated 6 years ago
- sourcecode of multi-planar prostate segmentation (ISBI publication in 2018)☆17Oct 8, 2019Updated 6 years ago
- The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net…☆1,347Jun 17, 2024Updated last year
- A U-Net combined with a variational auto-encoder that is able to learn conditional distributions over semantic segmentations.☆23Dec 17, 2018Updated 7 years ago
- ☆94Jun 17, 2019Updated 6 years ago
- MRI medical image segmentation☆173Feb 10, 2021Updated 5 years ago
- MRI brain extraction tool☆397Dec 18, 2024Updated last year
- Multimodal Brain Tumor Segmentation Challenge 2018☆52May 6, 2020Updated 5 years ago
- 3D Segmentation Pytorch version(unet basic model)☆17Apr 17, 2018Updated 7 years ago
- Hyppopy is a python toolbox for blackbox optimization. It's purpose is to offer a unified and easy to use interface to a collection of so…☆27Apr 26, 2022Updated 3 years ago
- A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation☆1,901Jul 25, 2024Updated last year
- Code for tutorial at MICCAI 2022☆94Nov 10, 2023Updated 2 years ago
- Uncertainty in Medical Image Analysis☆318Nov 6, 2021Updated 4 years ago
- TREX: A Framework for Extraction of CT Radiomics Features☆11Feb 6, 2018Updated 8 years ago
- Script for automated extraction of dosimetric parameters from multiple RT DICOM files.☆10Mar 1, 2018Updated 7 years ago
- An app to calculate doses from input RTPlan file☆12Feb 6, 2017Updated 9 years ago
- Attention UNet for Promise12 Prostate Segmentation☆29Jun 24, 2019Updated 6 years ago
- Scripts that have been useful. Includes some analysis of EGSnrc 3ddose files☆28Dec 4, 2017Updated 8 years ago
- SOTA medical image segmentation methods based on various challenges☆1,659Dec 12, 2023Updated 2 years ago
- 2D and 3D UNet implementation in PyTorch.☆167Aug 3, 2024Updated last year
- A medical imaging framework for Pytorch☆870Apr 26, 2024Updated last year
- TMI 2018. H-DenseUNet: Hybrid Densely Connected UNet for Liver and Tumor Segmentation from CT Volumes☆572Dec 8, 2022Updated 3 years ago
- A tool to do quick and dirty inspection of multichannel 3D data. I use it mainly to visualize batches for deep learning.☆55Feb 8, 2025Updated last year
- The code of "Attention Guided Network for Retinal Image Segmentation" in MICCAI 2019☆119Mar 29, 2020Updated 5 years ago
- code for MICCAI 2019 paper 'Uncertainty-aware Self-ensembling Model for Semi-supervised 3D Left Atrium Segmentation'.☆531Nov 13, 2020Updated 5 years ago
- 计算几何算法模板 | Computational geometry algorithm library assembled by myself, helped our team(Vegetables of Tongji) win silver medal in the IC…☆12Jul 8, 2019Updated 6 years ago
- Implemention of DVH prediction from the (contoured) anatomical scans ...☆11Jun 20, 2016Updated 9 years ago