Alternatives and similar repositories for pado

Users that are interested in pado are comparing it to the libraries listed below

• bioptimus / releases
  ☆108Updated 11 months ago
• HistAI / SPIDER
  SPIDER: A multi-organ pathology dataset with expert annotations and pre-trained models for AI-driven research. Available on Hugging Face …
  ☆36Updated 7 months ago
• BiomedSciAI / histocartography
  A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…
  ☆261Updated last year
• Bayer-Group / paquo
  PAthological QUpath Obsession - QuPath and Python conversations
  ☆122Updated 2 months ago
• Bayer-Group / tiffslide
  TiffSlide - cloud native openslide-python replacement based on tifffile
  ☆103Updated 5 months ago
• slideflow / slideflow
  Powerful, open-source AI tools for digital pathology.
  ☆333Updated last month
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆38Updated last year
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods_CPJUMP1
  ☆66Updated 8 months ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆82Updated last year
• JacobHanimann / scDINO
  Self-Supervised Vision Transformers for multiplexed imaging datasets
  ☆56Updated last year
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆95Updated last year
• okunator / cellseg_gsontools
  Feature extraction from GEOJson nuclei and tissue segmentation maps
  ☆16Updated 4 months ago
• owkin / histoplus
  ☆52Updated 2 months ago
• choosehappy / HistoQC
  HistoQC is an open-source quality control tool for digital pathology slides
  ☆307Updated last week
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆101Updated last month
• choosehappy / PatchSorter
  A tool for rapidly labeling objects using deep learning feature embedding
  ☆33Updated 2 months ago
• manzt / napari-lazy-openslide
  Lazily load multiscale whole-slide images with openslide and dask
  ☆33Updated 2 years ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆126Updated last week
• broadinstitute / Dino4Cells_analysis
  ☆13Updated 10 months ago
• kaiko-ai / eva
  Evaluation framework for oncology foundation models (FMs)
  ☆134Updated this week
• bgilbert / anonymize-slide
  Delete the label from a whole-slide image
  ☆65Updated 4 years ago
• kaiko-ai / towards_large_pathology_fms
  This repository contains the official implementation of the research paper: "Towards Training Large-Scale Pathology Foundation Models: fr…
  ☆34Updated 9 months ago
• labsyspharm / orion-crc
  ☆20Updated 4 months ago
• mehta-lab / dynamorph
  Learn morphological states of dynamic cells
  ☆12Updated 2 years ago
• owkin / HE2RNA_code
  Train a model to predict gene expression from histology slides.
  ☆108Updated 3 years ago
• EIDOSLAB / torchstain
  Stain normalization tools for histological analysis and computational pathology
  ☆158Updated last week
• bunnelab / virtues
  A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…
  ☆39Updated 8 months ago
• owkin / HistoSSLscaling
  Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…
  ☆158Updated last year
• markowetzlab / pathml
  A Python library for deep learning on whole-slide images
  ☆54Updated 4 years ago
• TissueImageAnalytics / tiatoolbox
  Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
  ☆479Updated last week