Bayer-Group / padoLinks
PAthological Data Obsession - cloud native digital pathology datasets
☆18Updated 2 years ago
Alternatives and similar repositories for pado
Users that are interested in pado are comparing it to the libraries listed below
Sorting:
- ☆109Updated last year
- TiffSlide - cloud native openslide-python replacement based on tifffile☆104Updated 8 months ago
- A tool for rapidly labeling objects using deep learning feature embedding☆34Updated 5 months ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆265Updated 2 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆84Updated last year
- ☆65Updated 5 months ago
- ☆71Updated 11 months ago
- SPIDER: A multi-organ pathology dataset with expert annotations and pre-trained models for AI-driven research. Available on Hugging Face …☆41Updated 10 months ago
- Whole Slide image (WSI) conversion for brightfield histology images☆37Updated 3 weeks ago
- Images and other data from the JUMP Cell Painting Consortium☆182Updated 2 weeks ago
- Cell Painting Gallery☆121Updated 2 weeks ago
- Feature extraction from GEOJson nuclei and tissue segmentation maps☆17Updated 7 months ago
- A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…☆53Updated last week
- PAthological QUpath Obsession - QuPath and Python conversations☆133Updated 5 months ago
- Python 3 library for the augmentation & normalization of H&E images☆64Updated 3 years ago
- Powerful, open-source AI tools for digital pathology.☆351Updated 2 months ago
- Python package for processing image-based profiling data☆134Updated last week
- Python implementation of bulk RNAseq deconvolution algorithms☆43Updated 6 months ago
- multimodal whole slide image registration in a graph structure☆100Updated last year
- ☆27Updated 7 months ago
- HistoQC is an open-source quality control tool for digital pathology slides☆318Updated 2 months ago
- Evaluation framework for oncology foundation models (FMs)☆147Updated last week
- Stain normalization tools for histological analysis and computational pathology☆174Updated 2 months ago
- Data and code to accompany our Nature publication☆48Updated 3 years ago
- Delete the label from a whole-slide image☆65Updated 4 years ago
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆71Updated 8 months ago
- Library for Digital Pathology Image Processing☆439Updated last week
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆60Updated last year
- Synthetic histology using GANs, for deep learning model explainability and trainee education.☆16Updated 2 years ago
- A Python library for deep learning on whole-slide images☆52Updated 4 years ago