Bayer-Group / padoLinks
PAthological Data Obsession - cloud native digital pathology datasets
☆18Updated 2 years ago
Alternatives and similar repositories for pado
Users that are interested in pado are comparing it to the libraries listed below
Sorting:
- ☆64Updated 6 months ago
- TiffSlide - cloud native openslide-python replacement based on tifffile☆103Updated 2 months ago
- Cell Painting Gallery☆100Updated last week
- Python package for processing image-based profiling data☆120Updated this week
- SPIDER: A multi-organ pathology dataset with expert annotations and pre-trained models for AI-driven research. Available on Hugging Face …☆33Updated 4 months ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆54Updated last year
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated last week
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- PAthological QUpath Obsession - QuPath and Python conversations☆118Updated 7 months ago
- ☆104Updated 8 months ago
- Lazily load multiscale whole-slide images with openslide and dask☆33Updated 2 years ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆258Updated last year
- Feature extraction from GEOJson nuclei and tissue segmentation maps☆14Updated last month
- Bio-Formats image file format to raw format converter☆95Updated this week
- A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.☆35Updated last week
- Images and other data from the JUMP Cell Painting Consortium☆174Updated this week
- Morphological profiling using deep learning☆117Updated 9 months ago
- multimodal whole slide image registration in a graph structure☆92Updated last year
- Python implementation of bulk RNAseq deconvolution algorithms☆40Updated 3 weeks ago
- Predicting Cell Health with Morphological Profiles☆37Updated 3 years ago
- [Nature Communications] O2VAE: a model for orientation-invariant representation learning (phenotyping) in cell biology data☆34Updated 4 months ago
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆22Updated 7 months ago
- ☆14Updated 7 months ago
- Learn morphological states of dynamic cells☆12Updated 2 years ago
- A tool for rapidly labeling objects using deep learning feature embedding☆33Updated last year
- Powerful, open-source AI tools for digital pathology.☆322Updated this week
- Train a model to predict gene expression from histology slides.☆106Updated 3 years ago
- A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…☆33Updated 6 months ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆215Updated 7 months ago
- rna2seg☆17Updated 3 months ago