simonarvin / braincoordinatorLinks
Open-source stereotaxic coordinator
☆15Updated 3 years ago
Alternatives and similar repositories for braincoordinator
Users that are interested in braincoordinator are comparing it to the libraries listed below
Sorting:
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Histology processing☆71Updated last week
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- ☆52Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- Registration of cells across sessions.☆75Updated last year
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 11 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆79Updated 8 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆111Updated 2 months ago
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- Tools to work with Allen Inst CCF data in matlab☆143Updated 5 months ago
- Web app for viewing results of ephys spike sorting☆27Updated 3 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆63Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- "Approaches to Study Neural Circuits" course☆65Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 3 months ago
- pyqt5 dependent applications for IBL sessions☆32Updated 2 months ago
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆106Updated this week
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆138Updated last week
- a visualization method for neural data☆240Updated 8 months ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 5 months ago
- Region Of Interest Classification and Tracking☆27Updated last week
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated last month
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆40Updated 2 weeks ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆71Updated last week
- Free, platform independent, behavior tracking software.☆143Updated 6 months ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago