Alternatives and similar repositories for braincoordinator

Users that are interested in braincoordinator are comparing it to the libraries listed below

• petersaj / AP_histology
  Histology processing
  ☆71Updated 2 months ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• Whitlock-Group / HERBS
  ☆52Updated last year
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆96Updated last year
• inscopix / inscopix-cnmfe
  Algorithm for automated source extraction from 1P data
  ☆23Updated 2 years ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆79Updated 7 months ago
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆111Updated last month
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆26Updated last year
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆56Updated 3 weeks ago
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆42Updated 4 years ago
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆54Updated 10 months ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆55Updated 2 years ago
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆27Updated this week
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆157Updated 2 weeks ago
• LorenFrankLab / spyglass
  Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
  ☆106Updated this week
• magland / sortingview
  Web app for viewing results of ephys spike sorting
  ☆27Updated 3 months ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆143Updated 4 months ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated last year
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆28Updated 3 years ago
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆138Updated 5 months ago
• sanworks / Bpod_Gen2
  Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
  ☆40Updated 2 weeks ago
• MouseLand / rastermap
  a visualization method for neural data
  ☆239Updated 8 months ago
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆181Updated 4 months ago
• gloewing / photometry_FLMM
  Code for Functional Mixed Models for Fiber Photometry
  ☆13Updated 4 months ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆31Updated 2 months ago
• SpikeInterface / probeinterface
  Python package to handle probe layout, geometry and wiring to device.
  ☆75Updated 2 weeks ago
• open-ephys / Bonsai.Miniscope
  Bonsai package for controlling headborne, calcium imaging miniscopes
  ☆12Updated last year
• BarbourLab / lussac
  Package for automatic post-processing and merging of multiple spike-sorting analyses.
  ☆28Updated this week