simonarvin / braincoordinatorLinks
Open-source stereotaxic coordinator
☆15Updated 2 years ago
Alternatives and similar repositories for braincoordinator
Users that are interested in braincoordinator are comparing it to the libraries listed below
Sorting:
- Histology processing☆67Updated 3 weeks ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated last year
- ☆52Updated 11 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 10 months ago
- Registration of cells across sessions.☆75Updated 11 months ago
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆76Updated 3 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆52Updated 6 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆150Updated this week
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated 3 weeks ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆93Updated 8 months ago
- Tools to work with Allen Inst CCF data in matlab☆138Updated 3 weeks ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆127Updated last month
- Fiber Photometry Modular Analysis Tool Suite☆40Updated 4 years ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆104Updated 7 months ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆173Updated 2 weeks ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆36Updated last week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆50Updated last year
- Web app for viewing results of ephys spike sorting☆26Updated 5 months ago
- pyqt5 dependent applications for IBL sessions☆28Updated this week
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 2 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆93Updated 3 weeks ago
- "Approaches to Study Neural Circuits" course☆66Updated 7 months ago
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆102Updated this week
- Python package to handle probe layout, geometry and wiring to device.☆67Updated last week
- Tools to register histological section images and cell count locations to mouse brain atlas☆27Updated 3 years ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆60Updated 2 years ago
- a visualization method for neural data☆235Updated 4 months ago
- Algorithm for automated source extraction from 1P data☆21Updated 2 years ago