thalamicseg / thomas_new
Segmentation of the thalamus into 11 nuclei and MTT using white-matter-nulled MPRAGE MRI image contrast with support now for standard MPRAGE also (Version 2.1) This is OBSOLETE. Please use http://github.com/thalamicseg/hipsthomasdocker which is the latest and maintained © Copyright Manojkumar Saranathan 2021-2025
☆23Updated last month
Alternatives and similar repositories for thomas_new:
Users that are interested in thomas_new are comparing it to the libraries listed below
- ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…☆51Updated this week
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆67Updated this week
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline☆51Updated last year
- An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images☆50Updated 8 months ago
- Preprocessing of diffusion MRI☆153Updated this week
- The open source toolbox for reproducible diffusion MRI-based microstructure estimation☆105Updated 4 months ago
- The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox☆66Updated this week
- DICOM to NIfTI conversion, NIfTI tools☆95Updated 7 months ago
- MP2RAGE Scripts - T1 map correction & Background noise removal☆57Updated 2 years ago
- Scripts to prepare MP2RAGE for Freesurfer☆26Updated last year
- A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data☆63Updated 5 months ago
- Automated Fiber Quantification☆77Updated last year
- Preprocessing of arterial spin labeling (ASL) data☆48Updated last week
- White matter tractography clustering and more...☆73Updated 2 weeks ago
- Microscopic diffusion anisotropy imaging made easy!☆24Updated 6 years ago
- ☆35Updated 3 years ago
- Multi-site dMRI harmonization☆47Updated 2 weeks ago
- Processing tools for high-resolution neuroimaging☆72Updated 4 months ago
- ☆27Updated 10 months ago
- List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data☆64Updated last year
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆94Updated 3 weeks ago
- Gradient Unwarping in Python☆35Updated 3 months ago
- niimath - a clone of fslmaths. Try the live demo:☆60Updated 3 months ago
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆25Updated 3 weeks ago
- Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps☆69Updated 8 months ago
- dMRI based fiber tracking using parallel transport tractography☆26Updated last month
- ☆17Updated last year
- Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising☆59Updated 5 months ago
- mrQ_BoxJoinBox☆22Updated last year
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆76Updated 4 years ago