A python package for performing GROMACS simulation ensembles
☆22Jul 12, 2026Updated 3 months ago
Alternatives and similar repositories for ensemble_md
Users that are interested in ensemble_md are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- companion artifacts for RosettaCon 2026 tutorial - using AI agents for scientific software engineering☆10Aug 5, 2026Updated 2 months ago
- the simple alchemistry test set☆10Nov 20, 2025Updated 11 months ago
- A repository providing jupyter notebooks and simulation inputs that accompany the mini course Hands-on tutorials: Advanced sampling metho…☆25Sep 26, 2024Updated 2 years ago
- Skipping the replica exchange ladder with normalizing flows☆13Feb 7, 2024Updated 2 years ago
- Benchmarks for OpenFF protein force fields☆11Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A comprehensive toolkit for predicting free energies☆62Jan 10, 2025Updated last year
- Graph-Based Force Fields Model to parameterize Force Fields by Graph Attention Networks☆10Apr 9, 2024Updated 2 years ago
- Tools to build coarse grained models and perform simulations with OpenMM☆24Aug 12, 2026Updated 2 months ago
- A repository for the development of data analysis tools for replica exchange molecular dynamics (REMD) simulations☆14Feb 20, 2023Updated 3 years ago
- ☆28Jun 2, 2026Updated 5 months ago
- Absolute solvation free energy calculations with OpenFF and OpenMM☆34Dec 1, 2024Updated last year
- ☆14Updated this week
- Alchemical Free Energy Calculations with Grand Canonical Ensemble☆24May 2, 2026Updated 6 months ago
- A versatile tool to investigate membrane☆11Dec 12, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bayesian Multistate Bennett Acceptance Ratio Method☆16Oct 16, 2026Updated 2 weeks ago
- Local-first molecular modeling, WebGPU simulation, and conformer exploration in the browser☆28Sep 25, 2026Updated last month
- Robust Equilibration Detection☆35Aug 6, 2026Updated 2 months ago
- Collection of shallow wrappers around popular Neural Network potentials for use with the NNPot interface in the GROMACS molecular simulat…☆22May 8, 2026Updated 5 months ago
- Repository for the 2024 OpenFE industry benchmark efforts☆49Aug 26, 2026Updated 2 months ago
- Heuristic energy-based cyclic peptide design☆17Feb 21, 2025Updated last year
- A PyQt5-based interactive tool for aligning and visualizing molecular analogs with customizable highlighting, transformations, and high-r…☆13Apr 29, 2026Updated 6 months ago
- Sire Molecular Simulations Framework☆69Updated this week
- a high-throughput alchemical free energy execution system for use with HPC, cloud, bare metal, and Folding@Home☆36Oct 20, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- VMD Plugin and associated scripts to build lignin structures from topological specifications☆17Jul 17, 2025Updated last year
- Torsion profile calculation and analysis made easy! Get quick access to various methods.☆13Dec 19, 2025Updated 10 months ago
- Endstate corrections from MM to QML potential☆15Feb 28, 2024Updated 2 years ago
- Automatically prepare structures from the PDB for molecular dynamics simulation☆14Updated this week
- protein structure prediction with precision☆29May 14, 2024Updated 2 years ago
- Python script to visualize helical wheels based on input sequence.☆11Mar 27, 2019Updated 7 years ago
- LamNet: an Alchemical-Path-Aware Graph Neural Network to Accelerate Binding Free Energy Calculation☆14Jul 10, 2025Updated last year
- Material for the 3rd i-CoMSE Workshop: Methods for Advanced Sampling☆43May 1, 2023Updated 3 years ago
- Enzyme kinetics data extraction pipeline☆18Sep 7, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- New implementation of `Topology.from_pdb`☆12Oct 23, 2026Updated last week
- ☆19Aug 18, 2026Updated 2 months ago
- The public versio☆116Jun 26, 2023Updated 3 years ago
- ☆14Updated this week
- Random Acceleration Molecular Dynamics in GROMACS☆46Sep 7, 2026Updated last month
- KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.☆35Aug 8, 2026Updated 2 months ago
- Benchmark and reference set for conformational energies in peptides☆14Oct 10, 2018Updated 8 years ago