A python package for performing GROMACS simulation ensembles
☆22Jul 12, 2026Updated 3 months ago
Alternatives and similar repositories for ensemble_md
Users that are interested in ensemble_md are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- the simple alchemistry test set☆10Nov 20, 2025Updated 10 months ago
- A repository providing jupyter notebooks and simulation inputs that accompany the mini course Hands-on tutorials: Advanced sampling metho…☆25Sep 26, 2024Updated 2 years ago
- Graph-Based Force Fields Model to parameterize Force Fields by Graph Attention Networks☆10Apr 9, 2024Updated 2 years ago
- ☆28Jun 2, 2026Updated 4 months ago
- Alchemical Free Energy Calculations with Grand Canonical Ensemble☆22May 2, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A repository for the development of data analysis tools for replica exchange molecular dynamics (REMD) simulations☆14Feb 20, 2023Updated 3 years ago
- Absolute solvation free energy calculations with OpenFF and OpenMM☆34Dec 1, 2024Updated last year
- Tools to build coarse grained models and perform simulations with OpenMM☆24Aug 12, 2026Updated 2 months ago
- Bayesian Multistate Bennett Acceptance Ratio Method☆16Sep 24, 2026Updated 2 weeks ago
- Repository for the 2024 OpenFE industry benchmark efforts☆48Aug 26, 2026Updated last month
- Sire Molecular Simulations Framework☆69Updated this week
- Endstate corrections from MM to QML potential☆15Feb 28, 2024Updated 2 years ago
- A comprehensive toolkit for predicting free energies☆62Jan 10, 2025Updated last year
- a high-throughput alchemical free energy execution system for use with HPC, cloud, bare metal, and Folding@Home☆36Sep 30, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- C++ toolkit for use in reading in and analyzing Gromacs files☆13Oct 3, 2020Updated 6 years ago
- A library to perform targeted free energy perturbation with normalizing flows.☆11Aug 11, 2026Updated 2 months ago
- VMD Plugin and associated scripts to build lignin structures from topological specifications☆17Jul 17, 2025Updated last year
- The public versio☆113Jun 26, 2023Updated 3 years ago
- protein structure prediction with precision☆29May 14, 2024Updated 2 years ago
- Random Acceleration Molecular Dynamics in GROMACS☆46Sep 7, 2026Updated last month
- Enzyme kinetics data extraction pipeline☆18Sep 7, 2026Updated last month
- ☆19Aug 18, 2026Updated last month
- reactive MD python pipeline for GROMACS using Kinetic Monte Carlo / Molecular Dynamics (KIMMDY)☆14Nov 19, 2019Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A package for all physics based/related models☆54Sep 12, 2024Updated 2 years ago
- Robust Equilibration Detection☆34Aug 6, 2026Updated 2 months ago
- ☆13Dec 13, 2023Updated 2 years ago
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆31Sep 27, 2023Updated 3 years ago
- Data generation and submission scripts for the QCArchive ecosystem.☆36Sep 30, 2026Updated last week
- Learning Protein-Ligand Properties with Atomic Environment Vectors☆10Apr 19, 2024Updated 2 years ago
- ai_in_chemistry_workshop☆81Sep 16, 2024Updated 2 years ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆27Jul 19, 2021Updated 5 years ago
- An automated framework for generating optimized partial charges for molecules☆40Oct 5, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆11Mar 28, 2024Updated 2 years ago
- Protein-peptide docking with ESMFold language model☆16May 30, 2026Updated 4 months ago
- Interactive plotting of data annotated with molecule structures.☆12Nov 30, 2023Updated 2 years ago
- Gromacs topology template generator☆16Jul 15, 2021Updated 5 years ago
- A repository for the final project implementing/applying Boltzmann generators for Computational Statistical Physics (PHYS 7810) at CU Bou…☆26Sep 21, 2022Updated 4 years ago
- A deep learning-based framework to uniquely identify an uncorrelated, isometric and meaningful latent representation.☆19Sep 12, 2023Updated 3 years ago
- Automated Adaptive Absolute alchemical Free Energy calculator☆132Oct 5, 2026Updated last week