BartBruininks / mdvwholeLinks
Density based object completion over PBC.
☆30Updated 8 months ago
Alternatives and similar repositories for mdvwhole
Users that are interested in mdvwhole are comparing it to the libraries listed below
Sorting:
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- ☆38Updated 11 months ago
- ☆65Updated last month
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆48Updated 4 years ago
- OpenMM plugin to interface with PLUMED☆68Updated 5 months ago
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆70Updated last week
- Sample inputs and tutorial for GROMACS-2022/CP2K QMMM interface☆35Updated 3 years ago
- Temperature generator for Replica Exchange MD simulations☆28Updated 2 years ago
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆30Updated last year
- Package for consistent reporting of relative free energy results☆39Updated 2 months ago
- ☆56Updated 2 years ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆40Updated 3 weeks ago
- Set up relative free energy calculations using a common scaffold☆24Updated this week
- Robust Equilibration Detection☆24Updated 3 months ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆37Updated 2 years ago
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆18Updated 2 years ago
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆33Updated 2 months ago
- Recipes and protocols for molecular free energy calculations using the openmmtools/perses and Open Free Energy toolkits☆14Updated this week
- Martini 3 small molecule database☆64Updated 2 weeks ago
- Python code for generating Boresch restraints from MD simulations☆22Updated 3 years ago
- ☆25Updated 3 years ago
- Analysis of non-covalent interactions in MD trajectories☆60Updated 7 months ago
- RESP with inter- and intra-molecular constraints in Psi4.☆32Updated 2 years ago
- INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems☆65Updated last year
- A python implementation of the string method with swarms of trajectories using GROMACS☆18Updated 2 years ago
- ☆29Updated 2 weeks ago
- Q6 Repository -- EVB, FEP and LIE simulator.☆34Updated last year
- Advanced toolkit for binding free energy calculations☆33Updated 2 months ago
- Enhanced sampling methods for molecular dynamics simulations☆38Updated 2 years ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated 2 years ago