BartBruininks / mdvwhole
Density based object completion over PBC.
☆28Updated 4 months ago
Alternatives and similar repositories for mdvwhole:
Users that are interested in mdvwhole are comparing it to the libraries listed below
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆30Updated last year
- Temperature generator for Replica Exchange MD simulations☆28Updated 2 years ago
- Sample inputs and tutorial for GROMACS-2022/CP2K QMMM interface☆35Updated 3 years ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆44Updated 4 years ago
- Robust Equilibration Detection☆20Updated last month
- A python implementation of the string method with swarms of trajectories using GROMACS☆18Updated 2 years ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆31Updated last year
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆66Updated last year
- ☆26Updated 3 weeks ago
- RESP with inter- and intra-molecular constraints in Psi4.☆30Updated last year
- Python code for generating Boresch restraints from MD simulations☆20Updated 2 years ago
- Advanced toolkit for binding free energy calculations☆32Updated 3 months ago
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆66Updated this week
- ☆33Updated 7 months ago
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆31Updated 5 years ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated last year
- A simple yet versatile toolkit to setup quantum mechanical/molecular mechanical (QM/MM) calculations from molecular dynamics trajectories…☆29Updated last year
- Enhanced sampling methods for molecular dynamics simulations☆36Updated 2 years ago
- Different run and analysis scripts as described in the research guides.☆13Updated 2 years ago
- Automated calculation of cavity in molecular cages☆18Updated 3 weeks ago
- GridMAT-MD membrane analysis program☆24Updated 6 years ago
- Package for consistent reporting of relative free energy results☆39Updated 2 weeks ago
- ☆25Updated 3 years ago
- Set up relative free energy calculations using a common scaffold☆22Updated last week
- ☆64Updated last year
- Q6 Repository -- EVB, FEP and LIE simulator.☆31Updated last year
- Martini 3 small-molecule database☆58Updated 7 months ago
- A Deep Neural Network to predict small molecule torsion energy profiles with the accuracy of QM☆39Updated 2 years ago
- OpenMM scripts for polarisable molecular dynamics with the AMOEBA force field☆24Updated 4 years ago
- Recipes and protocols for molecular free energy calculations using the openmmtools/perses and Open Free Energy toolkits☆12Updated this week