BartBruininks / mdvwholeLinks
Density based object completion over PBC.
☆30Updated 7 months ago
Alternatives and similar repositories for mdvwhole
Users that are interested in mdvwhole are comparing it to the libraries listed below
Sorting:
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆71Updated 2 years ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆48Updated 4 years ago
- Sample inputs and tutorial for GROMACS-2022/CP2K QMMM interface☆35Updated 3 years ago
- Set up relative free energy calculations using a common scaffold☆24Updated 2 months ago
- Temperature generator for Replica Exchange MD simulations☆28Updated 2 years ago
- OpenMM plugin to interface with PLUMED☆67Updated 4 months ago
- ☆37Updated 10 months ago
- ☆54Updated 2 years ago
- Python code for generating Boresch restraints from MD simulations☆22Updated 2 years ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆37Updated last year
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated 2 years ago
- ☆65Updated last year
- Martini 3 small-molecule database☆62Updated 10 months ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆40Updated 2 weeks ago
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆30Updated last year
- Robust Equilibration Detection☆22Updated 2 months ago
- Random Acceleration Molecular Dynamics in GROMACS☆37Updated 11 months ago
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆83Updated 2 weeks ago
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆32Updated 3 weeks ago
- Enhanced sampling methods for molecular dynamics simulations☆37Updated 2 years ago
- A python implementation of the string method with swarms of trajectories using GROMACS☆18Updated 2 years ago
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆70Updated this week
- Conversion of coarsegrain to atomistic (complete rewrite of the original CG2AT)☆31Updated 11 months ago
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆17Updated 2 years ago
- This pipeline is executing a RE-EDS run for relative free energy calculations. It can be used for example for calculation of hydration fr…☆31Updated last month
- A fast solver for large scale MBAR/UWHAM equations☆39Updated 10 months ago
- 📐 Symmetry-corrected RMSD in Python☆98Updated 2 months ago
- Repository for the 2024 OpenFE industry benchmark efforts☆22Updated last week
- Analysis of non-covalent interactions in MD trajectories☆58Updated 6 months ago
- ☆29Updated last month