choderalab / chironLinks
Differentiable Markov Chain Monte Carlo
☆15Updated last year
Alternatives and similar repositories for chiron
Users that are interested in chiron are comparing it to the libraries listed below
Sorting:
- An automated framework for generating optimized partial charges for molecules☆39Updated 2 weeks ago
- a high-throughput alchemical free energy execution system for use with HPC, cloud, bare metal, and Folding@Home☆32Updated this week
- Absolute solvation free energy calculations with OpenFF and OpenMM☆25Updated last year
- A Python library for constructing polymer topologies and coordinates☆16Updated 2 months ago
- Enhanced sampling methods for molecular dynamics simulations☆41Updated 2 years ago
- Transferable Double Exponential non-bonded potential for condensed phase simulations of small molecules☆25Updated 2 months ago
- core data models of the Open Free Energy ecosystem☆40Updated last week
- Package for consistent reporting of relative free energy results☆40Updated last month
- Equivariant GNN for the prediction of atomic multipoles up to quadrupoles.☆30Updated 3 years ago
- Recipes and protocols for molecular free energy calculations using the openmmtools/perses and Open Free Energy toolkits☆15Updated 2 weeks ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆24Updated 4 years ago
- Data and scripts for comprehensive benchmark of conformer relative energies☆25Updated 5 years ago
- Implementation of Differentiable Molecular Simulations with torchMD.☆15Updated 2 years ago
- A universal ML model to predict molecular dynamics trajectories with long time steps☆25Updated last month
- Differentiably evaluate energies using SMIRNOFF force fields☆18Updated 11 months ago
- An engine for electrostatic ML embedding for multiscale modelling.☆25Updated last week
- Source code and input files associated to the paper "Targeted free energy perturbation revisited: Accurate free energies from mapped refe…☆13Updated 4 years ago
- Zero Shot Molecular Generation via Similarity Kernels☆28Updated 3 months ago
- Notebooks demonstrating how to do simple tasks related to free energy calculations.☆55Updated this week
- Perform polymerization and crosslinking in MARTINI coarse-grained forcefield using GROMACS MD package☆23Updated last week
- OpenFF NAGL☆19Updated last week
- Endstate corrections from MM to QML potential☆14Updated last year
- OpenMM plugin to interface with XTB☆18Updated last month
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆55Updated last year
- Automatic generation of LAMMPS data file for atomistic and coarse-grained simulations of molecular and polymeric materials with various t…☆15Updated 5 months ago
- Particle-mesh based calculations of long-range interactions in JAX☆19Updated 2 weeks ago
- asyncmd is a library to write concurrent code to run and analyze molecular dynamics simulations using pythons async/await syntax. Computa…☆19Updated 3 months ago
- Plugins to enable using custom functional forms in SMIRNOFF based force fields☆11Updated 2 weeks ago
- Scripts, inputs and the results generated as part of the training the Sage line of OpenFF force fields.☆21Updated 5 months ago
- Robust Equilibration Detection☆26Updated 3 months ago