pmajka / poSSum

Related projects ⓘ

Alternatives and complementary repositories for poSSum

• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆51Updated 4 years ago
• itsasimiqbal / SeBRe
  Developing a Brain Atlas through Deep Learning
  ☆51Updated last year
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆75Updated last week
• ActiveBrainAtlas / MouseBrainAtlas
  A system for building mouse brain atlas from histology series
  ☆11Updated 4 years ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆112Updated last month
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated 11 months ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆18Updated 3 years ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 3 years ago
• Entodi / MeshNet
  Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940
  ☆16Updated 6 years ago
• AllenInstitute / cocoframer
  COmmon COordinate FRAMEwork in R
  ☆36Updated 4 years ago
• SystemsResearch / CUBIC_nprot
  Code for the image processing and analysis described our Nature Protocols paper.
  ☆10Updated 9 years ago
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆11Updated 3 weeks ago
• tractatus / wholebrain
  R package for segmentation, registration and generating web-based brain atlases from microscope images
  ☆86Updated 3 years ago
• ncullen93 / neuroCombat
  Harmonizing neuroimaging data across scanners and sites
  ☆34Updated 4 years ago
• AllenCell / aics-ml-segmentation
  ☆30Updated 2 years ago
• albert597 / TRAILMAP
  ☆45Updated 4 years ago
• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆78Updated 6 years ago
• ntustison / ANTsRNetExamples
  That’s what I do: I drink and I know things.
  ☆13Updated 5 years ago
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆42Updated this week
• scilus / tractoflow
  TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity
  ☆53Updated last month
• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆23Updated 2 months ago
• jo-mueller / Slice2Volume
  Script that registers Histology slices to volumetric image data
  ☆11Updated last year
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆123Updated last week
• BIC-MNI / minc-toolkit
  Metaproject uniting all the available minc tools
  ☆37Updated last year
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆48Updated last week
• cgohlke / roifile
  Read and write ImageJ ROI format
  ☆65Updated 2 months ago
• maweigert / neubias_academy_stardist
  ☆28Updated 3 years ago
• soltanianzadeh / STNeuroNet
  Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…
  ☆60Updated 5 years ago
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆89Updated this week
• owenrandlett / Z-Brain
  Z-Brain Viewer and Analysis Scripts for MAP-Mapping
  ☆21Updated 5 years ago