pmajka / poSSum
☆12Updated 5 years ago
Alternatives and similar repositories for poSSum:
Users that are interested in poSSum are comparing it to the libraries listed below
- Developing a Brain Atlas through Deep Learning☆51Updated last year
- A system for building mouse brain atlas from histology series☆11Updated 4 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆52Updated 4 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆119Updated last month
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 2 months ago
- COmmon COordinate FRAMEwork in R☆36Updated 4 years ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆86Updated 3 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 9 years ago
- Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940☆16Updated 6 years ago
- ☆11Updated last year
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆21Updated 6 years ago
- Tools for distributed alignment of massive images☆78Updated this week
- CloudReg☆11Updated 9 months ago
- Efficient cell detection in large images using cellfinder in napari☆23Updated last year
- The ImageJ framework for quantification of neuronal anatomy☆44Updated this week
- MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification☆21Updated this week
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆18Updated 3 years ago
- ☆18Updated 2 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆128Updated this week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆89Updated 2 months ago
- Script that registers Histology slices to volumetric image data☆11Updated last year
- ☆18Updated 2 years ago
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆23Updated last month
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- ☆45Updated 4 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 3 weeks ago
- The ANTsX Ecosystem for Mapping the Mouse Brain☆10Updated last month
- Standalone cellfinder cell detection algorithm☆19Updated last year
- Generate a package-manager-friendly mouse brain atlases collection.☆20Updated last year