pmajka / poSSumLinks
☆13Updated 6 years ago
Alternatives and similar repositories for poSSum
Users that are interested in poSSum are comparing it to the libraries listed below
Sorting:
- Developing a Brain Atlas through Deep Learning☆53Updated 3 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆130Updated last week
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated last year
- Automated 3D brain registration with support for multiple species and atlases.☆140Updated 3 weeks ago
- The ImageJ framework for quantification of neuronal anatomy☆52Updated 2 weeks ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆44Updated 4 months ago
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- ☆45Updated 5 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆107Updated 3 months ago
- A system for building mouse brain atlas from histology series☆11Updated 5 years ago
- CloudReg☆11Updated last year
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940☆16Updated 7 years ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆91Updated 4 years ago
- www.vaa3d.org☆80Updated 7 years ago
- COmmon COordinate FRAMEwork in R☆37Updated 5 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 10 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- A Python interface to access neuroanatomical atlases☆166Updated last week
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆35Updated 2 weeks ago
- Segmentation of anatomical structures in a common coordinate space☆34Updated 3 weeks ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆57Updated last month
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space☆50Updated 3 years ago
- medical image visualization library and development toolkit☆23Updated 2 years ago
- ☆34Updated 6 months ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago