Alternatives and similar repositories for poSSum

Users that are interested in poSSum are comparing it to the libraries listed below

• itsasimiqbal / SeBRe
  Developing a Brain Atlas through Deep Learning
  ☆53Updated last month
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆136Updated 3 weeks ago
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆105Updated last month
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆124Updated 3 weeks ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆36Updated last year
• albert597 / TRAILMAP
  ☆45Updated 5 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆86Updated last week
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆53Updated last week
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆12Updated 11 months ago
• AllenInstitute / cocoframer
  COmmon COordinate FRAMEwork in R
  ☆36Updated 5 years ago
• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆80Updated 7 years ago
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated last month
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆52Updated this week
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 2 years ago
• SWC-Advanced-Microscopy / StitchIt
  Stitching of large tiled datasets
  ☆21Updated 5 months ago
• ActiveBrainAtlas / MouseBrainAtlas
  A system for building mouse brain atlas from histology series
  ☆11Updated 5 years ago
• nickdelgrosso / ABBA-QuPath-RegistrationAnalysis
  A visualization app for 3D-registered data processed in ABBA and QuPath
  ☆19Updated 2 years ago
• tractatus / wholebrain
  R package for segmentation, registration and generating web-based brain atlases from microscope images
  ☆88Updated 4 years ago
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆22Updated last year
• soltanianzadeh / STNeuroNet
  Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…
  ☆67Updated 6 years ago
• janelia-flyem / NeuTu
  Software package for neuron reconstruction and visualization
  ☆39Updated 3 months ago
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆22Updated 2 weeks ago
• neurodata / CloudReg
  CloudReg
  ☆11Updated last year
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆53Updated this week
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆33Updated 3 weeks ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• AdaptiveMotorControlLab / CellSeg3D
  A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
  ☆103Updated 2 months ago
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆23Updated 3 years ago
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆218Updated 3 weeks ago