Alternatives and similar repositories for poSSum:

Users that are interested in poSSum are comparing it to the libraries listed below

• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆52Updated 4 years ago
• itsasimiqbal / SeBRe
  Developing a Brain Atlas through Deep Learning
  ☆51Updated last year
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆119Updated last week
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated last year
• Entodi / MeshNet
  Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940
  ☆16Updated 6 years ago
• ActiveBrainAtlas / MouseBrainAtlas
  A system for building mouse brain atlas from histology series
  ☆11Updated 4 years ago
• ntustison / ANTsXMouseBrainMapping
  The ANTsX Ecosystem for Mapping the Mouse Brain
  ☆11Updated 3 weeks ago
• neurodata / CloudReg
  CloudReg
  ☆11Updated 10 months ago
• AllenInstitute / cocoframer
  COmmon COordinate FRAMEwork in R
  ☆36Updated 4 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆80Updated last week
• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆24Updated 3 weeks ago
• scilus / tractoflow
  TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity
  ☆54Updated 4 months ago
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆12Updated 4 months ago
• chrisgorgo / alleninf
  Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.
  ☆28Updated 6 years ago
• berenslab / mini-atlas
  Phenotypic variation of transcriptomic cell types in mouse motor cortex
  ☆24Updated 3 years ago
• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆91Updated last week
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆18Updated 3 years ago
• ncullen93 / neuroCombat
  Harmonizing neuroimaging data across scanners and sites
  ☆33Updated 4 years ago
• nipy / nitransforms
  a standalone fork of nipy/nibabel#656
  ☆29Updated last month
• BIC-MNI / minc-toolkit
  Metaproject uniting all the available minc tools
  ☆37Updated last year
• SystemsResearch / CUBIC_nprot
  Code for the image processing and analysis described our Nature Protocols paper.
  ☆10Updated 9 years ago
• albert597 / TRAILMAP
  ☆45Updated 4 years ago
• kwagstyl / surface_tools
  Tools for mesh surface-based operations
  ☆35Updated 5 years ago
• NeuroanatomyAndConnectivity / surfdist
  For calculating exact geodesic distances on cortical surface meshes
  ☆53Updated 6 months ago
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆46Updated this week
• IBT-FMI / mouse-brain-templates
  Generate a package-manager-friendly mouse brain atlases collection.
  ☆21Updated last year
• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆42Updated 3 months ago
• jaydevine / MusMorph
  MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses.
  ☆11Updated 6 months ago
• illdopejake / Hippocampus_AP_Axis
  Code used for Hippocampus Anterior/Posterior gene expression and neuroimaging analyses
  ☆10Updated last year