Alternatives and similar repositories for poSSum

Users that are interested in poSSum are comparing it to the libraries listed below

• itsasimiqbal / SeBRe
  Developing a Brain Atlas through Deep Learning
  ☆53Updated 5 months ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆141Updated this week
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆132Updated 2 weeks ago
• Entodi / MeshNet
  Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940
  ☆16Updated 7 years ago
• neuronets / nobrainer
  A framework for developing neural network models for 3D image processing.
  ☆167Updated last month
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆12Updated last year
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆36Updated 2 years ago
• morphonets / SNT
  The framework for quantification of neuronal anatomy
  ☆55Updated last week
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆91Updated 3 weeks ago
• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆35Updated 2 months ago
• ActiveBrainAtlas / MouseBrainAtlas
  A system for building mouse brain atlas from histology series
  ☆11Updated 5 years ago
• SystemsResearch / CUBIC_nprot
  Code for the image processing and analysis described our Nature Protocols paper.
  ☆10Updated 10 years ago
• berenslab / mini-atlas
  Phenotypic variation of transcriptomic cell types in mouse motor cortex
  ☆26Updated 4 years ago
• scilus / tractoflow
  TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity
  ☆61Updated last year
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆43Updated 5 months ago
• AllenInstitute / cocoframer
  COmmon COordinate FRAMEwork in R
  ☆38Updated 5 years ago
• nipreps / smriprep
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  ☆161Updated last week
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆35Updated this week
• nipy / nitransforms
  a standalone fork of nipy/nibabel#656
  ☆35Updated last week
• ucl-pond / pySuStaIn
  Subtype and Stage Inference (SuStaIn) algorithm with an example using simulated data.
  ☆193Updated 2 months ago
• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆80Updated 7 years ago
• tractatus / wholebrain
  R package for segmentation, registration and generating web-based brain atlases from microscope images
  ☆93Updated 4 years ago
• Conxz / multiBrain
  A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!
  ☆100Updated 9 months ago
• albert597 / TRAILMAP
  ☆46Updated 5 years ago
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆27Updated this week
• ncullen93 / neuroCombat
  Harmonizing neuroimaging data across scanners and sites
  ☆35Updated 5 years ago
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆170Updated 2 weeks ago
• NeuroanatomyAndConnectivity / surfdist
  For calculating exact geodesic distances on cortical surface meshes
  ☆53Updated last year
• neurodata / CloudReg
  CloudReg
  ☆11Updated last year