pmajka / poSSumLinks
☆13Updated 6 years ago
Alternatives and similar repositories for poSSum
Users that are interested in poSSum are comparing it to the libraries listed below
Sorting:
- Developing a Brain Atlas through Deep Learning☆53Updated 2 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- COmmon COordinate FRAMEwork in R☆36Updated 5 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆129Updated 2 weeks ago
- Automated 3D brain registration with support for multiple species and atlases.☆138Updated this week
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated last year
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- The ImageJ framework for quantification of neuronal anatomy☆52Updated last week
- ☆45Updated 5 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Updated 3 months ago
- Tools for distributed alignment of massive images☆88Updated last month
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆89Updated 4 years ago
- Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940☆16Updated 7 years ago
- A system for building mouse brain atlas from histology series☆11Updated 5 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆106Updated 2 months ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- CloudReg☆11Updated last year
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆33Updated 2 weeks ago
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆105Updated this week
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- Python package for interacting with NDA web services. Used to validate, submit, and download data to and from NDA.☆61Updated 3 weeks ago
- Automated 3D cell detection in very large images☆219Updated this week
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space☆50Updated 3 years ago
- Multiple Automatically Generated Templates brain segmentation algorithm☆50Updated last year
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆54Updated last week
- www.vaa3d.org☆80Updated 7 years ago
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆31Updated 2 weeks ago
- A framework for developing neural network models for 3D image processing.☆167Updated 3 weeks ago
- A Python interface to access neuroanatomical atlases☆164Updated last week