pmajka / poSSumLinks
☆13Updated 5 years ago
Alternatives and similar repositories for poSSum
Users that are interested in poSSum are comparing it to the libraries listed below
Sorting:
- Developing a Brain Atlas through Deep Learning☆53Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆120Updated last month
- Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940☆16Updated 7 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- Automated 3D brain registration with support for multiple species and atlases.☆134Updated last week
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 8 months ago
- A system for building mouse brain atlas from histology series☆11Updated 4 years ago
- COmmon COordinate FRAMEwork in R☆36Updated 5 years ago
- The ImageJ framework for quantification of neuronal anatomy☆50Updated last week
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 5 years ago
- For calculating exact geodesic distances on cortical surface meshes☆54Updated 11 months ago
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space☆50Updated 2 years ago
- Tools for distributed alignment of massive images☆84Updated 3 weeks ago
- Harmonizing neuroimaging data across scanners and sites☆34Updated 4 years ago
- www.vaa3d.org☆79Updated 7 years ago
- CloudReg☆11Updated last year
- ☆45Updated 5 years ago
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆28Updated last week
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆99Updated last week
- A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!☆92Updated 4 months ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆98Updated 3 weeks ago
- Software package for neuron reconstruction and visualization☆38Updated last month
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆88Updated 4 years ago
- Python package for interacting with NDA web services. Used to validate, submit, and download data to and from NDA.☆58Updated last month
- Subtype and Stage Inference (SuStaIn) algorithm with an example using simulated data.☆168Updated 6 months ago
- Tools for mesh surface-based operations☆36Updated 4 months ago
- TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity☆58Updated 9 months ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 2 weeks ago
- The ANTsX Ecosystem for Mapping the Mouse Brain☆13Updated 3 weeks ago