Alternatives and similar repositories for freesurfer-7t-pipeline

Users that are interested in freesurfer-7t-pipeline are comparing it to the libraries listed below

• juryxy / JuSpace
  This is the repository for the JuSpace toolbox allowing for cross-modal correlations between imaging data and positron emission tomograph…
  ☆61Updated 6 months ago
• faskowit / multiAtlasTT
  multi atlas transfer tools for neuroimaging (maTT)
  ☆66Updated 11 months ago
• Qoala-T / QC
  Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
  ☆78Updated 4 years ago
• HALFpipe / HALFpipe
  ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
  ☆105Updated this week
• kwagstyl / surface_tools
  Tools for mesh surface-based operations
  ☆38Updated 8 months ago
• arielletambini / denoiser
  Nuisance removal tool for fMRI data
  ☆57Updated last year
• NeuroanatomyAndConnectivity / gradient_analysis
  ☆100Updated 8 years ago
• gllmflndn / gifti
  MATLAB/Octave GIfTI Library
  ☆27Updated 7 months ago
• Washington-University / cifti-matlab
  MATLAB code for reading and writing CIFTI connectivity files
  ☆67Updated last year
• frantisekvasa / rotate_parcellation
  Code (in Matlab and R) to perform a spherical rotation (permutation) of a parcellated cortical map.
  ☆47Updated 2 years ago
• miykael / atlasreader
  Python interface for generating coordinate tables and region labels from statistical MRI images
  ☆108Updated 3 weeks ago
• bids-apps / HCPPipelines
  A BIDS App for minimal preprocessing using the HCP Pipelines
  ☆37Updated last month
• atdemarco / svrlsmgui
  A graphical multivariate lesion-symptom mapping toolbox
  ☆11Updated 2 months ago
• yetianmed / subcortex
  ☆135Updated 3 months ago
• jdiedrichsen / suit
  Toolbox for the analysis of cerebellar imaging data
  ☆22Updated last year
• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆43Updated last month
• isebenius / MIND
  This repository contains a Python implementation of Morphometric INverse Divergence (MIND) calculation for the estimation of structural s…
  ☆43Updated last year
• mattcieslak / easy_lausanne
  Easy creation of Lausanne2008 atlases
  ☆23Updated 5 years ago
• ecr05 / MSM_HOCR
  Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries
  ☆41Updated 3 years ago
• pboutinaud / SHiVAi
  The SHiVAi pipeline for preprocessing, AI-based segmentation, and reporting of cCVSD biomarkers from brain MRI images
  ☆19Updated 5 months ago
• jcbeer / longCombat
  R package to implement longitudinal ComBat: A method for harmonizing multi-batch longitudinal data
  ☆37Updated last month
• jmtyszka / bidskit
  Utility functions for working with DICOM and BIDS neuroimaging data
  ☆64Updated 2 months ago
• spin-test / spin-test
  This toolbox includes MATLAB scripts to perform a "spin test" of anatomical correspondence between cortical surface maps, as presented in…
  ☆54Updated 5 years ago
• DevelopmentalImagingMCRI / freesurfer_statsurf_display
  Displays regional stats on Freesurfer surfaces in MATLAB
  ☆15Updated 5 years ago
• RafaelRomeroGarcia / subParcellation
  Subdivides the surface-based Desikan-Killiany atlas into equally sized regions. Please cite: Romero-Garcia R, Atienza M, Clemmensen LH, C…
  ☆16Updated this week
• gbarisano / alps
  Bash script to compute DTI-ALPS
  ☆63Updated last month
• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆65Updated last month
• pGarciaS / PREEMACS
  PREEMACS. pipeline for PREprocessing and Extraction of the MACaque brain Surface
  ☆17Updated last year
• PennLINC / xcpEngine
  Official public repository for the XCP Engine. This tool is deprecated in favor of XCP-D and ASLPrep.
  ☆65Updated 2 years ago
• DCAN-Labs / abcd-dicom2bids
  For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of sp…
  ☆19Updated 8 months ago