neurodesk / neurocontainersLinks
The containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a container to make them easily available for pipelines
☆35Updated this week
Alternatives and similar repositories for neurocontainers
Users that are interested in neurocontainers are comparing it to the libraries listed below
Sorting:
- The plug-and-play, browser-accessible, containerised data analysis environment.☆57Updated this week
- Processing tools for high-resolution neuroimaging☆73Updated last month
- precon_all surface pipline☆29Updated last month
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆107Updated last week
- BIDS app wrapping recon-all from FreeSurfer☆44Updated last month
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆73Updated 2 months ago
- a standalone fork of nipy/nibabel#656☆35Updated 2 weeks ago
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆43Updated this week
- TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity☆62Updated last year
- Preprocessing of diffusion MRI☆171Updated last month
- VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.☆75Updated 3 weeks ago
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆78Updated 4 years ago
- niimath - a clone of fslmaths. Try the live demo:☆71Updated 2 months ago
- A WebGL-powered Jupyter Widget for Niivue based on anywidget☆45Updated last week
- fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI☆37Updated this week
- PNH segmentation pipelines based on nipype☆23Updated last week
- Docker version of HIPS-THOMAS☆33Updated 3 months ago
- A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!☆101Updated 10 months ago
- The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox☆93Updated last week
- BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)☆64Updated this week
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆77Updated last week
- Stand alone fMRI software suite for layer-fMRI analyses.☆105Updated 2 months ago
- The TemplateFlow Archive - A DataLad super-dataset☆93Updated 2 weeks ago
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆162Updated this week
- Modern Neuroimaging Made Simple☆26Updated this week
- fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/☆48Updated this week
- ☆13Updated 5 years ago
- Flexible bidsificator for multimodal datasets☆13Updated last month
- A Python implementation of 'dual-coding'☆42Updated last year
- A web service for semi-automated conversion of raw imaging data to BIDS☆34Updated 6 months ago