neurodesk / neurocontainersLinks
The containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a container to make them easily available for pipelines
☆30Updated last week
Alternatives and similar repositories for neurocontainers
Users that are interested in neurocontainers are comparing it to the libraries listed below
Sorting:
- The plug-and-play, browser-accessible, containerised data analysis environment.☆48Updated this week
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆69Updated last year
- A web service for semi-automated conversion of raw imaging data to BIDS☆31Updated 3 weeks ago
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆99Updated last week
- Processing tools for high-resolution neuroimaging☆71Updated 8 months ago
- A flexible, scalable, and easy to use data analysis environment for reproducible neuroimaging☆40Updated this week
- BIDS app wrapping recon-all from FreeSurfer☆42Updated 9 months ago
- BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)☆59Updated last week
- VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.☆73Updated last month
- A Python implementation of 'dual-coding'☆42Updated last year
- precon_all surface pipline☆27Updated 2 months ago
- Small Animal Magnetic Resonance Imaging via Python.☆43Updated last year
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆42Updated last week
- TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity☆59Updated 10 months ago
- a standalone fork of nipy/nibabel#656☆33Updated last week
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆70Updated last week
- BRAPH 2.0 is a comprehensive software package for the analysis and visualization of brain connectivity data, offering flexible customizat…☆49Updated 3 months ago
- Website for the 2021 OHBM Hackathon☆22Updated 2 years ago
- Non-linear warps between common rhesus macaque brain templates☆26Updated last month
- BigBrainWarp☆26Updated last month
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆77Updated 4 years ago
- Automated Preprocessing Pipeline for Fetal Resting-State fMRI Data☆15Updated 2 years ago
- To convert Human Connectome projects(HCP) data to BIDS std☆29Updated 3 years ago
- PNH segmentation pipelines based on nipype☆24Updated last week
- MP2RAGE Scripts - T1 map correction & Background noise removal☆64Updated 2 years ago
- fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI☆33Updated last month
- niimath - a clone of fslmaths. Try the live demo:☆66Updated this week
- QSMxT is an end-to-end software toolbox for Quantitative Susceptibility Mapping.☆49Updated 2 weeks ago
- Preprocessing of diffusion MRI☆160Updated this week
- Public repository of cmig_tools including FEMA☆24Updated 9 months ago