Github repository for the paper: Sparse autoencoders uncover biologically interpretable features in protein language model representations https://www.pnas.org/doi/10.1073/pnas.2506316122
☆14Jun 28, 2025Updated last year
Alternatives and similar repositories for Rep_SAEs_PLMs
Users that are interested in Rep_SAEs_PLMs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Jul 28, 2025Updated last year
- Simple implementation of a GPT (training and inference) in PyTorch.☆13Dec 11, 2023Updated 2 years ago
- Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders☆315Oct 31, 2025Updated last year
- GraphVAMPnets combines graph neural networks with variational approach for Markovian process (VAMP) theory to identify the slow collectiv…☆13Feb 20, 2024Updated 2 years ago
- ☆51Nov 1, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SST2 implementation in openmm☆23Jul 9, 2026Updated 3 months ago
- ☆12Sep 13, 2020Updated 6 years ago
- A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.☆32Jul 25, 2022Updated 4 years ago
- ☆18May 22, 2025Updated last year
- ☆31Aug 16, 2026Updated 2 months ago
- Small_molecule_binder_design_use_pseudocycles☆26Nov 19, 2024Updated last year
- Scaling to Tens of Thousands of Test-Time Iterations with Loop-Native Attention Residuals☆12Oct 21, 2026Updated 2 weeks ago
- VAE with Attention Mechanism for a more powerful representation of interactions☆21Jun 29, 2019Updated 7 years ago
- DeepFold-PLM☆12Oct 3, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Propose CDR single-point mutations that rescue antibody expression without disrupting antigen binding, using bound vs. unbound ProteinMPN…☆16May 26, 2026Updated 5 months ago
- ArtKrit, a plugin for Krita that helps artists enhance their drawing skills by scaffolding the process of replicating a reference image i…☆17Jan 17, 2026Updated 9 months ago
- Graph Learning over Macromolecule Representations☆27Dec 31, 2022Updated 3 years ago
- ☆13Aug 31, 2026Updated 2 months ago
- Extension of ThermoMPNN for double mutant predictions☆67Mar 23, 2026Updated 7 months ago
- Committee Meeting Reports - LaTeX☆11Jun 11, 2018Updated 8 years ago
- A set of codes to help you deal with your Physics Chemistry Lab. course☆12Jan 23, 2018Updated 8 years ago
- Code for blog post `J++ Lens: Jacobian Filtering Enables More Faithful Workspace Lenses`☆19Oct 17, 2026Updated 3 weeks ago
- Dance Revolution: Long-Term Dance Generation with Music via Curriculum Learning☆11Mar 11, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Software for processing molecular barcoding (UMI)-based NGS data☆10May 22, 2020Updated 6 years ago
- ☆12Sep 29, 2024Updated 2 years ago
- ☆14Nov 18, 2025Updated 11 months ago
- Public harness and deterministic grader for BixBench3.☆14Oct 28, 2026Updated last week
- DuetGen: Music Driven Two-Person Dance Generation via Hierarchical Masked Modeling [SIGGRAPH 2025]☆17Jan 17, 2026Updated 9 months ago
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆12Dec 10, 2023Updated 2 years ago
- ☆11Apr 4, 2023Updated 3 years ago
- Python module for the calculation of shape complementarity☆14Apr 4, 2026Updated 7 months ago
- Latents-based conformational control in OpenFold3.☆82May 25, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- software used in the paper "Exploring the potential of 3D Zernike descriptors and SVM for protein–protein interface prediction"☆11Oct 21, 2026Updated 2 weeks ago
- Information-cell theory paper and POC C++ implementation☆11Oct 25, 2026Updated 2 weeks ago
- Brain Interpreter and Visualizer Online.☆10Sep 1, 2016Updated 10 years ago
- ☆13Dec 17, 2024Updated last year
- TiDE-Ab is a generative framework for the de novo design of therapeutic antibodies targeting specific epitopes.☆13Aug 31, 2026Updated 2 months ago
- ☆13Oct 9, 2025Updated last year
- Humanness of de-novo designed proteins☆48May 19, 2025Updated last year