nilsec / micron
Library for automatic tracking of microtubules in large scale EM datasets.
☆9Updated 2 years ago
Alternatives and similar repositories for micron:
Users that are interested in micron are comparing it to the libraries listed below
- ☆17Updated 7 years ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆15Updated 7 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Updated 3 years ago
- Pytorch implementation of the LearnedRandomWalker module☆29Updated 4 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆38Updated 2 years ago
- Simple watershed and agglomeration library for affinity graphs.☆22Updated 5 months ago
- ☆20Updated 4 years ago
- Accepted by ISBI 2022 (Oral)☆39Updated 3 years ago
- Instance segmentation via deep pixel embedding☆23Updated 4 years ago
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- ☆18Updated 2 years ago
- Discrete Morse-based pipeline for neuron tracing on tracer injection and single-neuron data sets.☆11Updated 4 years ago
- ☆28Updated 5 years ago
- Fill holes in binary 2D & 3D images fast.☆20Updated 2 months ago
- This code was submitted to Cell Tracking Challenge, ISBI 2020.☆14Updated 3 years ago
- ☆16Updated 8 years ago
- ☆29Updated last year
- Python TEASAR Skeletonization for Sparse Labels☆9Updated last year
- ☆15Updated 5 years ago
- Aligner for large scale serial section image data☆15Updated last year
- Repository for Vesselness algorithms☆47Updated 11 months ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆47Updated 11 months ago
- Registration of 3D triangular meshes onto a 2D image can be performed using optimisation and fast X-ray simulation on GPU. Automatic esti…☆11Updated 5 years ago
- ☆14Updated 8 months ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆37Updated 8 months ago
- Ranking Operator Response of Path Openings☆28Updated last year
- DRMIME - Differentiable Mutual Information and Matrix Exponential for Multi-Resolution Image Registration☆46Updated 5 years ago
- Weakly supervised nuclei segmentation using mixed points and masks annotation☆10Updated 5 years ago
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated 2 years ago