mandanasmi / TCGA_BenchmarkLinks
TCGA Benchmark Tasks for Clinical Attribute Prediction based on Genome
☆14Updated 4 years ago
Alternatives and similar repositories for TCGA_Benchmark
Users that are interested in TCGA_Benchmark are comparing it to the libraries listed below
Sorting:
- Few shot learning for cancer☆36Updated 3 years ago
- Drug Response Variational Autoencoder☆31Updated 6 years ago
- scPretrain: Multi-task self-supervised learning for cell type classification☆23Updated 3 years ago
- ☆16Updated 4 years ago
- ☆18Updated 2 years ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Updated 4 years ago
- Towards Gene Expression Convolutions using Gene Interaction Graphs☆75Updated 3 years ago
- Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network☆85Updated 2 years ago
- ☆33Updated 2 years ago
- Code for paper "A deep learning framework for drug repurposing via emulating clinical trials on real world patient data" (Accepted to Nat…☆96Updated 3 years ago
- Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…☆17Updated 5 years ago
- ☆67Updated 2 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆120Updated 3 years ago
- End-to-end deep learning model for low dimensional latent space extraction and multi-class classification on multi-omics datasets.☆34Updated 4 years ago
- iLearn, a Python Toolkit and Web Server Integrating the Functionality of Feature Calculation, Extraction, Clustering, Feature Selection, …☆82Updated 2 years ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 4 years ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆55Updated 4 years ago
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆17Updated 3 years ago
- ☆76Updated 3 years ago
- Deep Learning-based Clustering Approaches for Bioinformatics☆139Updated 4 years ago
- code repo for Set2Gaussian☆15Updated 5 years ago
- Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)☆73Updated last year
- ☆17Updated 9 months ago
- P-NET, Biologically informed deep neural network for prostate cancer classification and discovery☆156Updated 3 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- Prediction of mRNA subcellular localization using deep recurrent neural networks☆15Updated 5 years ago
- Imputing Single-cell RNA-seq data by combining Graph Convolution and Autoencoder Neural Networks☆19Updated last year
- Network-based project to explore gene connectivity through biological scales☆23Updated 8 months ago