Python scripts for automation of work within 3D Slicer
☆21Sep 13, 2024Updated last year
Alternatives and similar repositories for 3D-Slicer-Scripts
Users that are interested in 3D-Slicer-Scripts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simple Scripted Module to batch process patients in 3D Slicer☆19Jun 26, 2025Updated last year
- Examples of simple application-specific workflows implemented using 3D Slicer☆11Nov 8, 2020Updated 5 years ago
- Bioconductor R-package: Curated Prostate Cancer Data☆11Oct 1, 2024Updated last year
- BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.☆15Mar 16, 2026Updated 4 months ago
- Lightweight Qt-based GUI Framework for displaying 3D data with OpenGL☆12Dec 18, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 3D Slicer modules for brain segmentation using deep learning.☆32Mar 5, 2024Updated 2 years ago
- A comprehensive Radiomics pipeline for extracting, preprocessing, and analyzing oncological imaging biomarkers that can be used for benig…☆16Sep 15, 2021Updated 4 years ago
- Julia code for SPECT image reconstruction☆13Jul 21, 2026Updated 3 weeks ago
- Analysis for svaseq paper☆20Aug 20, 2014Updated 11 years ago
- Deep learning multi modality automated organ segmentation tools☆17Jan 22, 2025Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆29Jan 9, 2021Updated 5 years ago
- 3D Slicer nnUNet integration to streamline usage for nnUNet based AI extensions.☆71Jul 29, 2026Updated 2 weeks ago
- Julia package for reconstructing fiber trajectories from multi-scale, multi-modal imaging data☆22Apr 24, 2025Updated last year
- Inkscape Extension for Origami diagramming☆12Feb 1, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A tutorial for the free Inkscape cross-platform vector graphics editor.☆13Oct 4, 2016Updated 9 years ago
- Recipes for common medical image segmentation tasks using 3D Slicer☆65Jul 26, 2022Updated 4 years ago
- Write PubMed search results with two display options (citation or listview) to PDF or Word☆13Oct 18, 2020Updated 5 years ago
- CIVET Installer☆32Jan 29, 2022Updated 4 years ago
- Covid19 Dashboard India☆12Feb 27, 2021Updated 5 years ago
- A Minimum Viable Data Format for using R as a front-end for the Blender 3D Rendering Engine☆17May 3, 2021Updated 5 years ago
- A Quick Guide on Radiology Image Pre-processing for Deep Learning Applications in Prostate Cancer Research☆31Jul 25, 2023Updated 3 years ago
- Course website for Biostat 840 in Fall 2022☆12Dec 20, 2022Updated 3 years ago
- ☆14Feb 22, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆13Jun 17, 2026Updated last month
- How to process 3D scans in Meshlab☆11Sep 17, 2020Updated 5 years ago
- Spectral Imaging and Electron Energy Loss Spectroscopy Analysis☆10Mar 5, 2018Updated 8 years ago
- TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.☆34Feb 13, 2024Updated 2 years ago
- Collection of utilities that are not polished implementations but can be useful to users☆102Jul 8, 2026Updated last month
- ☆12Feb 5, 2026Updated 6 months ago
- 3D Slicer extension to visualize and plan an osteotomy surgery.☆12Mar 15, 2022Updated 4 years ago
- Blender application template simulating degrees of freedom in a focused ion beam system☆10Sep 3, 2021Updated 4 years ago
- Materials for the yearly PerkLab bootcamp course☆98Jul 29, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆34May 24, 2023Updated 3 years ago
- Dimensionality reduction (UMAP, t-SNE, PCA) for ImageJ/Fiji☆12May 6, 2025Updated last year
- An R package for creating CONSORT diagrams with ggplot☆56Jul 20, 2026Updated 3 weeks ago
- A Hyperspy extension package for processing and reconstructing electron tomography data☆16Jul 21, 2026Updated 3 weeks ago
- 3D Slicer extension to create tube or closed surface model from markup fiducials☆16May 14, 2026Updated 2 months ago
- ☆12Mar 18, 2024Updated 2 years ago
- Modified version of MultiStackRegistration, for use from scripts.☆12May 18, 2022Updated 4 years ago